- Sep 06, 2018
- Sep 05, 2018
- Sep 04, 2018
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cmaffeo2 authored
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cmaffeo2 authored
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cmaffeo2 authored
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cmaffeo2 authored
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cmaffeo2 authored
Added support for having multiple intrahelical connections from a single "location" in a segment; allows two ssDNA strands to emerge from the ends of a dsDNA segment
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cmaffeo2 authored
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cmaffeo2 authored
Code now always places a ssDNA bead when an ssDNA segment is between two dsDNA segments. Code now more robustly places a bead and intrahelical junctions
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cmaffeo2 authored
Updated algorithm that fits splines into beads to extend farther into intrahelically connected segments, and to use linear interpolation for quaternions, resulting in better all-atom models
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cmaffeo2 authored
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cmaffeo2 authored
Updated bead model potentials to work with antiparallel DNA; also made terminal_crossovers bond shorter at 1.2 nm (vs 1.85)
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cmaffeo2 authored
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cmaffeo2 authored
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cmaffeo2 authored
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cmaffeo2 authored
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- Aug 29, 2018
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cmaffeo2 authored
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- Aug 28, 2018
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cmaffeo2 authored
Added type_ argument to SingleStrandedSegment.add_crossover() for compatibility with DoubleStrandedSegment
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cmaffeo2 authored
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cmaffeo2 authored
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cmaffeo2 authored
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cmaffeo2 authored
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cmaffeo2 authored
Updated imports to be compatible with new package structure; updated paths to resources to use new get_resource_path() function
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cmaffeo2 authored
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- Aug 24, 2018
- Aug 21, 2018
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cmaffeo2 authored
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- Aug 20, 2018
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cmaffeo2 authored
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- Aug 17, 2018
- Aug 13, 2018
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cmaffeo2 authored
Made bond potentials longer ranged (120 vs 50 nm), and removed unneeded 'continue' statement that was attempting to prevent double-counting when placing initial beads
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- Aug 10, 2018
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cmaffeo2 authored
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