Commit d291aa85 authored by cmaffeo2's avatar cmaffeo2
Browse files

Renamed project to 'mrdna'

parent 135db759
recursive-include dnarbd/resources *
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recursive-include mrdna/resources *
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# DNArbd: multiresolution coarse-grained simulations of DNA nanotechnology
# Multi-Resolution DNA simulations
...
......@@ -4,9 +4,9 @@
import argparse
import re
import pathlib
from dnarbd.simulate import multiresolution_simulation as simulate
from mrdna.simulate import multiresolution_simulation as simulate
parser = argparse.ArgumentParser(prog="dnarbd",
parser = argparse.ArgumentParser(prog="mrdna",
description="""Easy multiresolution simulations of DNA nanotechnology objects using ARBD""")
parser.add_argument('-o','--output-prefix', type=str, default=None,
......@@ -42,11 +42,11 @@ if __name__ == '__main__':
raise Exception("Unrecognized input file '{}'".format(infile))
if extension == '.json':
from dnarbd.readers import read_cadnano as read_model
from mrdna.readers import read_cadnano as read_model
elif extension == '.ma':
from dnarbd.readers import read_vhelix as read_model
from mrdna.readers import read_vhelix as read_model
elif extension == '.pdb':
from dnarbd.readers import read_atomic_pdb as read_model
from mrdna.readers import read_atomic_pdb as read_model
else:
raise Exception("Unrecognized input file '{}'".format(infile))
......
......@@ -3,8 +3,8 @@ import sys
from glob import glob
import re
from dnarbd.readers import cadnano_reader()
from dnarbd.simulate import run_multiresolution_simulation as simulate
from mrdna.readers import cadnano_reader()
from mrdna.simulate import run_multiresolution_simulation as simulate
if __name__ == '__main__':
if len(sys.argv) > 1:
......
import numpy as np
from dnarbd import SegmentModel, SingleStrandedSegment, DoubleStrandedSegment
from dnarbd.simulate import run_multiresolution_simulation as simulate
from mrdna import SegmentModel, SingleStrandedSegment, DoubleStrandedSegment
from mrdna.simulate import run_multiresolution_simulation as simulate
"""
Example using segmentmodel API to construct a model
......
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