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tbgl
tools
mrdna
Commits
70ab8a63
Commit
70ab8a63
authored
6 years ago
by
cmaffeo2
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Added LICENSE, README and setup.py
parent
acb01034
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LICENSE
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LICENSE
README.md
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README.md
dnarbd/examples/segmentmodel_example.py
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dnarbd/examples/segmentmodel_example.py
setup.py
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setup.py
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LICENSE
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+
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70ab8a63
University of Illinois Open Source License
Copyright 2010-2016 Aksimentiev Group,
All rights reserved.
Developed by: Aksimentiev Group
University of Illinois at Urbana-Champaign
http://bionano.phsyics.illinois.edu
Permission is hereby granted, free of charge, to any person obtaining a copy of
this software and associated documentation files (the Software), to deal with
the Software without restriction, including without limitation the rights to
use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies
of the Software, and to permit persons to whom the Software is furnished to
do so, subject to the following conditions:
- Redistributions of source code must retain the above copyright notice,
this list of conditions and the following disclaimers.
- Redistributions in binary form must reproduce the above copyright notice,
this list of conditions and the following disclaimers in the documentation
and/or other materials provided with the distribution.
- Neither the names of the Aksimentiev Group, University of Illinois at
Urbana-Champaign, nor the names of its contributors may be used to endorse or
promote products derived from this Software without specific prior written
permission.
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL
THE CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR
OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE,
ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR
OTHER DEALINGS WITH THE SOFTWARE.
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README.md
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# DNArbd: multiresolution coarse-grained simulations of DNA nanotechnology
...
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dnarbd/examples/segmentmodel_example.py
+
3
−
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import
numpy
as
np
from
segmentmodel
import
SegmentModel
,
SingleStrandedSegment
,
DoubleStrandedSegment
from
nbPot
import
nbDnaScheme
from
dnarbd
import
SegmentModel
,
SingleStrandedSegment
,
DoubleStrandedSegment
"""
Example of using segmentmodel to construct a CG
May need to
execute after running
:
PATH=/home/cmaffeo2/
ana
conda3/bin:$PATH
; source activate cadnano
May need to
update your shell PATH variable before running this script, e.g.
:
PATH=/home/cmaffeo2/
mini
conda3/bin:$PATH
"""
...
...
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setup.py
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import
setuptools
with
open
(
"
README.md
"
,
"
r
"
)
as
fh
:
long_description
=
fh
.
read
()
setuptools
.
setup
(
name
=
"
dnarbd
"
,
version
=
"
0.1dev
"
,
author
=
"
Christopher Maffeo
"
,
author_email
=
"
cmaffeo2@illinois.edu
"
,
description
=
"
Tools for simulating DNA nanotechnology with ARBD
"
,
long_description
=
long_description
,
long_description_content_type
=
"
text/markdown
"
,
url
=
"
https://gitlab.engr.illinois.edu/tbgl/tools/dnarbd
"
,
packages
=
setuptools
.
find_packages
(),
classifiers
=
(
"
Programming Language :: Python :: 3
"
,
"
License :: UIUC Open source License
"
,
"
Operating System :: OS Independent
"
,
),
)
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