Renamed project to 'mrdna'

MANIFEST.in

-recursive-include dnarbd/resources *
\ No newline at end of file
+recursive-include mrdna/resources *
\ No newline at end of file

README.md

-# DNArbd: multiresolution coarse-grained simulations of DNA nanotechnology
+# Multi-Resolution DNA simulations
 
 ...

bin/dnarbd → bin/mrdna

@@ -4,9 +4,9 @@
 import argparse
 import re
 import pathlib
-from dnarbd.simulate import multiresolution_simulation as simulate
+from mrdna.simulate import multiresolution_simulation as simulate
 
-parser = argparse.ArgumentParser(prog="dnarbd",
+parser = argparse.ArgumentParser(prog="mrdna",
 				 description="""Easy multiresolution simulations of DNA nanotechnology objects using ARBD""")
 
 parser.add_argument('-o','--output-prefix', type=str, default=None,
@@ -42,11 +42,11 @@ if __name__ == '__main__':
         raise Exception("Unrecognized input file '{}'".format(infile))
         
     if extension == '.json':
-        from dnarbd.readers import read_cadnano as read_model
+        from mrdna.readers import read_cadnano as read_model
     elif extension == '.ma':
-        from dnarbd.readers import read_vhelix as read_model
+        from mrdna.readers import read_vhelix as read_model
     elif extension == '.pdb':
-        from dnarbd.readers import read_atomic_pdb as read_model
+        from mrdna.readers import read_atomic_pdb as read_model
     else:
         raise Exception("Unrecognized input file '{}'".format(infile))
                     

dnarbd/examples/from_cadnano.py → mrdna/examples/from_cadnano.py

@@ -3,8 +3,8 @@ import sys
 from glob import glob
 import re
 
-from dnarbd.readers import cadnano_reader()
-from dnarbd.simulate import run_multiresolution_simulation as simulate
+from mrdna.readers import cadnano_reader()
+from mrdna.simulate import run_multiresolution_simulation as simulate
 
 if __name__ == '__main__':
     if len(sys.argv) > 1:

dnarbd/examples/from_code.py → mrdna/examples/from_code.py

 import numpy as np
-from dnarbd import SegmentModel, SingleStrandedSegment, DoubleStrandedSegment
-from dnarbd.simulate import run_multiresolution_simulation as simulate
+from mrdna import SegmentModel, SingleStrandedSegment, DoubleStrandedSegment
+from mrdna.simulate import run_multiresolution_simulation as simulate
 
 """
 Example using segmentmodel API to construct a model