Commit 93b5c9da authored by cmaffeo2's avatar cmaffeo2
Browse files

Pass MDAnalysis str() obj instead of Path for PDB reader

parent d1e71f5f
......@@ -29,7 +29,7 @@ bases = resnames.keys()
resname_to_key = {n:k for k,v in resnames.items() for n in v.split()}
complement = dict(A='T', C='G', T='A', G='C')
refUnis = {b:mda.Universe(get_resource_path("generate-nts/1-w3dna/{}{}.pdb".format(b,complement[b])))
refUnis = {b:mda.Universe(str(get_resource_path("generate-nts/1-w3dna/{}{}.pdb".format(b,complement[b]))))
for b in bases}
stack_text = "not name O5' P O1P O2P OP1 OP2 O3' 1H* 2H* 3H* 0H* H*"
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