Skip to content
GitLab
Menu
Projects
Groups
Snippets
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
Menu
Open sidebar
tbgl
tools
mrdna
Commits
0befffbe
Commit
0befffbe
authored
Jul 28, 2020
by
cmaffeo2
Browse files
Fixed oxDNA topology for circular strands; increased default max_backbone_force
parent
c37732c5
Changes
1
Hide whitespace changes
Inline
Side-by-side
mrdna/segmentmodel.py
View file @
0befffbe
...
...
@@ -3626,7 +3626,7 @@ E = 0 0 0
idx
=
0
sidx
=
1
for
strand
in
strands
:
prev
=
idx
+
len
(
strand
.
num_nt
)
if
strand
.
is_circular
else
-
1
prev
=
idx
+
strand
.
num_nt
-
1
if
strand
.
is_circular
else
-
1
last
=
idx
if
strand
.
is_circular
else
-
1
## Traverse 3'-to-5'
...
...
@@ -3666,7 +3666,7 @@ E = 0 0 0
delta_translation
=
0.22
,
delta_rotation
=
0.22
,
verlet_skin
=
0.5
,
max_backbone_force
=
5
,
max_backbone_force
=
100
,
):
if
seed
is
None
:
...
...
Write
Preview
Markdown
is supported
0%
Try again
or
attach a new file
.
Attach a file
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment