diff --git a/mrdna/segmentmodel.py b/mrdna/segmentmodel.py index 3234f1006be2047133d523413033af2871d583c9..b7603b70cac3b09f96753f5c4413ce136e08995b 100644 --- a/mrdna/segmentmodel.py +++ b/mrdna/segmentmodel.py @@ -3626,7 +3626,7 @@ E = 0 0 0 idx = 0 sidx = 1 for strand in strands: - prev = idx+len(strand.num_nt) if strand.is_circular else -1 + prev = idx+strand.num_nt-1 if strand.is_circular else -1 last = idx if strand.is_circular else -1 ## Traverse 3'-to-5' @@ -3666,7 +3666,7 @@ E = 0 0 0 delta_translation = 0.22, delta_rotation = 0.22, verlet_skin = 0.5, - max_backbone_force = 5, + max_backbone_force = 100, ): if seed is None: