Began reorganizing project

src/TabulatedDihedral.h

src/TabulatedMethods.cuh

src/TabulatedPotential.cu

src/TabulatedPotential.h

src/TrajectoryWriter.h

src/common.h

src/findcudalib.mk

src/gridSampleDef.c

src/gridSampleFlow.c

src/imd.c

src/imd.h

src/makefile.clang

src/runBrownTown.cpp

src/useful.cu

src/useful.h

src/util.cpp

src/util.h

src/vmdsock.c

src/vmdsock.h