/============================================\ | Atomic Resolution Brownian Dynamics (ARBD) | \============================================/ Brownian dynamics (BD) simulation is method for studying biomolecules, ions, and nanomaterials that balances detail with computational efficiency. ARBD supports tabulated non-bonded and bonded interactions between BD particles that can also be influenced by grid-specified potentials. Uniquely, ARBD also allows grid-specified densities and potentials to be associated with rigid body particles that rotate and translate to represent larger molecules. Most importantly, Please be aware that ARBD is being actively developed, is offered as alpha software (bugs may be present) and is offered without warranty. /==============\ | Installation | \==============/ To build, please run `make' in the src directory Note that ARBD was developed using CUDA-8.0 and targets NVIDIA GPUs featuring 6.0 compute capability. The code should still run using older NVIDIA hardware, but no guarantees are being made. /========\ | Citing | \========/ If you publish results obtained using ARBD, please cite the following manuscript: "Atoms-to-microns model for small solute transport through sticky nanochannels" Rogan Carr, Jeffrey Comer, Mark D. Ginsberg, and Aleksei Aksimentiev Lab Chip 11(22) 3766-73 (2011) /=========\ | Authors | \=========/ ARBD is developed by the Aksimentiev group (http://bionano.physics.illinois.edu). Please direct questions or problems to Chris. Christopher Maffeo <cmaffeo2@illinois.edu> Jeffrey Comer Max Belkin Emmanual Guzman Justin Dufresne Terrance Howard
cmaffeo2
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