From 3e2ac53ad830f8f195c9c0be8ab260d023c0fbd9 Mon Sep 17 00:00:00 2001
From: Chris Maffeo <cmaffeo2@illinois.edu>
Date: Wed, 9 Nov 2016 15:23:07 -0600
Subject: [PATCH] Began reorganizing project
---
notes.org | 174 ------------------
Angle.cu => src/Angle.cu | 0
Angle.h => src/Angle.h | 0
BaseGrid.cu => src/BaseGrid.cu | 0
BaseGrid.h => src/BaseGrid.h | 0
.../BrownianParticle.cu | 0
BrownianParticle.h => src/BrownianParticle.h | 0
.../BrownianParticleType.cpp | 0
.../BrownianParticleType.h | 0
.../CellDecomposition.cu | 0
.../CellDecomposition.h | 0
ComputeForce.cu => src/ComputeForce.cu | 0
ComputeForce.cuh => src/ComputeForce.cuh | 0
ComputeForce.h => src/ComputeForce.h | 0
ComputeGridGrid.cu => src/ComputeGridGrid.cu | 0
.../ComputeGridGrid.cuh | 0
ComputeJustForce.h => src/ComputeJustForce.h | 0
Configuration.cpp => src/Configuration.cpp | 0
Configuration.h => src/Configuration.h | 0
CudaUtil.cu => src/CudaUtil.cu | 0
CudaUtil.cuh => src/CudaUtil.cuh | 0
DcdWriter.h => src/DcdWriter.h | 0
Debug.h => src/Debug.h | 0
Dihedral.cu => src/Dihedral.cu | 0
Dihedral.h => src/Dihedral.h | 0
Exclude.cu => src/Exclude.cu | 0
Exclude.h => src/Exclude.h | 0
FlowForce.cpp => src/FlowForce.cpp | 0
FlowForce.h => src/FlowForce.h | 0
GPUController.h => src/GPUController.h | 0
GPUManager.cpp => src/GPUManager.cpp | 0
GPUManager.h => src/GPUManager.h | 0
GrandBrownTown.cu => src/GrandBrownTown.cu | 0
GrandBrownTown.cuh => src/GrandBrownTown.cuh | 0
GrandBrownTown.h => src/GrandBrownTown.h | 0
JamesBond.cu => src/JamesBond.cu | 0
JamesBond.h => src/JamesBond.h | 0
Makefile => src/Makefile | 0
OverlordGrid.h => src/OverlordGrid.h | 0
Random.h => src/Random.h | 0
RandomCPU.h => src/RandomCPU.h | 0
RandomCUDA.cu => src/RandomCUDA.cu | 0
RandomCUDA.h => src/RandomCUDA.h | 0
RandomGsl.h => src/RandomGsl.h | 0
Reader.h => src/Reader.h | 0
Reservoir.cu => src/Reservoir.cu | 0
Reservoir.h => src/Reservoir.h | 0
RigidBody.cu => src/RigidBody.cu | 0
RigidBody.h => src/RigidBody.h | 0
.../RigidBodyController.cu | 0
.../RigidBodyController.h | 0
RigidBodyGrid.cu => src/RigidBodyGrid.cu | 0
RigidBodyGrid.h => src/RigidBodyGrid.h | 0
RigidBodyType.cu => src/RigidBodyType.cu | 0
RigidBodyType.h => src/RigidBodyType.h | 0
Scatter.cpp => src/Scatter.cpp | 0
Scatter.h => src/Scatter.h | 0
TabulatedAngle.cu => src/TabulatedAngle.cu | 0
TabulatedAngle.h => src/TabulatedAngle.h | 0
.../TabulatedDihedral.cu | 0
.../TabulatedDihedral.h | 0
.../TabulatedMethods.cuh | 0
.../TabulatedPotential.cu | 0
.../TabulatedPotential.h | 0
TrajectoryWriter.h => src/TrajectoryWriter.h | 0
common.h => src/common.h | 0
findcudalib.mk => src/findcudalib.mk | 0
gridSampleDef.c => src/gridSampleDef.c | 0
gridSampleFlow.c => src/gridSampleFlow.c | 0
imd.c => src/imd.c | 0
imd.h => src/imd.h | 0
makefile.clang => src/makefile.clang | 0
runBrownTown.cpp => src/runBrownTown.cpp | 0
useful.cu => src/useful.cu | 0
useful.h => src/useful.h | 0
util.cpp => src/util.cpp | 0
util.h => src/util.h | 0
vmdsock.c => src/vmdsock.c | 0
vmdsock.h => src/vmdsock.h | 0
79 files changed, 174 deletions(-)
delete mode 100644 notes.org
rename Angle.cu => src/Angle.cu (100%)
rename Angle.h => src/Angle.h (100%)
rename BaseGrid.cu => src/BaseGrid.cu (100%)
rename BaseGrid.h => src/BaseGrid.h (100%)
rename BrownianParticle.cu => src/BrownianParticle.cu (100%)
rename BrownianParticle.h => src/BrownianParticle.h (100%)
rename BrownianParticleType.cpp => src/BrownianParticleType.cpp (100%)
rename BrownianParticleType.h => src/BrownianParticleType.h (100%)
rename CellDecomposition.cu => src/CellDecomposition.cu (100%)
rename CellDecomposition.h => src/CellDecomposition.h (100%)
rename ComputeForce.cu => src/ComputeForce.cu (100%)
rename ComputeForce.cuh => src/ComputeForce.cuh (100%)
rename ComputeForce.h => src/ComputeForce.h (100%)
rename ComputeGridGrid.cu => src/ComputeGridGrid.cu (100%)
rename ComputeGridGrid.cuh => src/ComputeGridGrid.cuh (100%)
rename ComputeJustForce.h => src/ComputeJustForce.h (100%)
rename Configuration.cpp => src/Configuration.cpp (100%)
rename Configuration.h => src/Configuration.h (100%)
rename CudaUtil.cu => src/CudaUtil.cu (100%)
rename CudaUtil.cuh => src/CudaUtil.cuh (100%)
rename DcdWriter.h => src/DcdWriter.h (100%)
rename Debug.h => src/Debug.h (100%)
rename Dihedral.cu => src/Dihedral.cu (100%)
rename Dihedral.h => src/Dihedral.h (100%)
rename Exclude.cu => src/Exclude.cu (100%)
rename Exclude.h => src/Exclude.h (100%)
rename FlowForce.cpp => src/FlowForce.cpp (100%)
rename FlowForce.h => src/FlowForce.h (100%)
rename GPUController.h => src/GPUController.h (100%)
rename GPUManager.cpp => src/GPUManager.cpp (100%)
rename GPUManager.h => src/GPUManager.h (100%)
rename GrandBrownTown.cu => src/GrandBrownTown.cu (100%)
rename GrandBrownTown.cuh => src/GrandBrownTown.cuh (100%)
rename GrandBrownTown.h => src/GrandBrownTown.h (100%)
rename JamesBond.cu => src/JamesBond.cu (100%)
rename JamesBond.h => src/JamesBond.h (100%)
rename Makefile => src/Makefile (100%)
rename OverlordGrid.h => src/OverlordGrid.h (100%)
rename Random.h => src/Random.h (100%)
rename RandomCPU.h => src/RandomCPU.h (100%)
rename RandomCUDA.cu => src/RandomCUDA.cu (100%)
rename RandomCUDA.h => src/RandomCUDA.h (100%)
rename RandomGsl.h => src/RandomGsl.h (100%)
rename Reader.h => src/Reader.h (100%)
rename Reservoir.cu => src/Reservoir.cu (100%)
rename Reservoir.h => src/Reservoir.h (100%)
rename RigidBody.cu => src/RigidBody.cu (100%)
rename RigidBody.h => src/RigidBody.h (100%)
rename RigidBodyController.cu => src/RigidBodyController.cu (100%)
rename RigidBodyController.h => src/RigidBodyController.h (100%)
rename RigidBodyGrid.cu => src/RigidBodyGrid.cu (100%)
rename RigidBodyGrid.h => src/RigidBodyGrid.h (100%)
rename RigidBodyType.cu => src/RigidBodyType.cu (100%)
rename RigidBodyType.h => src/RigidBodyType.h (100%)
rename Scatter.cpp => src/Scatter.cpp (100%)
rename Scatter.h => src/Scatter.h (100%)
rename TabulatedAngle.cu => src/TabulatedAngle.cu (100%)
rename TabulatedAngle.h => src/TabulatedAngle.h (100%)
rename TabulatedDihedral.cu => src/TabulatedDihedral.cu (100%)
rename TabulatedDihedral.h => src/TabulatedDihedral.h (100%)
rename TabulatedMethods.cuh => src/TabulatedMethods.cuh (100%)
rename TabulatedPotential.cu => src/TabulatedPotential.cu (100%)
rename TabulatedPotential.h => src/TabulatedPotential.h (100%)
rename TrajectoryWriter.h => src/TrajectoryWriter.h (100%)
rename common.h => src/common.h (100%)
rename findcudalib.mk => src/findcudalib.mk (100%)
rename gridSampleDef.c => src/gridSampleDef.c (100%)
rename gridSampleFlow.c => src/gridSampleFlow.c (100%)
rename imd.c => src/imd.c (100%)
rename imd.h => src/imd.h (100%)
rename makefile.clang => src/makefile.clang (100%)
rename runBrownTown.cpp => src/runBrownTown.cpp (100%)
rename useful.cu => src/useful.cu (100%)
rename useful.h => src/useful.h (100%)
rename util.cpp => src/util.cpp (100%)
rename util.h => src/util.h (100%)
rename vmdsock.c => src/vmdsock.c (100%)
rename vmdsock.h => src/vmdsock.h (100%)
diff --git a/notes.org b/notes.org
deleted file mode 100644
index a98f8d4..0000000
--- a/notes.org
+++ /dev/null
@@ -1,174 +0,0 @@
-
-* TODO active
-** Fix wrapping routines (trouble with machine precision
-
-** make units and kT more uniform (references to 295 K are hardcoded into RB code and Temperature code)
-*** I would prefer to specify temperature in K, rather than specifying a scaling factor to be applied to all energies to make them kT
-
-** handle periodic boundaries for RBs
-** RB read restart file
-** RB throw exception if an RB type uses a grid key multiple times
-** RB each RB gets temperature from grid
-
-
-* TODO eventually
-** enable flag to disable physics-checking assertions in kernels (also write these assertions)
-** split computation into multiple regions
-*** simulate regions, also in overlap
-**** atoms at edge of overlap can have DoF frozen
-*** periodically synchronize positions
-*** optimize to minimize communication & error
-**** monitor energy jumps associated with this process
-
-
-** organize code a bit better
-** increase cells/cutoff
-
-** improve pairlist algorithm
-http://arxiv.org/pdf/1306.1737.pdf
-** RB optionally don't eval forces every ts
-
-** pairlists for rigid bodies
-*** maybe for grids, depending on parallel structure of code
-
-* Organization of code
-** RgidBodyController (RBC) holds device pointers, manages force evaluation and integration
-
-
-* other ideas
-** interpolate density grid?
-
-BaseGrid.h: // RBTODO Fix?
-BaseGrid.h- BaseGrid(); // cmaffeo2 (2015) moved this out of protected, cause I wanted BaseGrid in a struct
-BaseGrid.h- // The most obvious of constructors.
-BaseGrid.h- BaseGrid(Matrix3 basis0, Vector3 origin0, int nx0, int ny0, int nz0);
-BaseGrid.h-
---
-BaseGrid.h- float a0, a1, a2, a3;
-BaseGrid.h-
-BaseGrid.h: // RBTODO parallelize loops?
-BaseGrid.h-
-BaseGrid.h- // Mix along x, taking the derivative.
-BaseGrid.h- float g2[4][4];
-BaseGrid.h- for (int iy = 0; iy < 4; iy++) {
---
-BaseGrid.h- }
-BaseGrid.h-
-BaseGrid.h: // RBTODO overload with optimized algorithm
-BaseGrid.h- // skip transforms (assume identity basis)
-BaseGrid.h- HOST DEVICE inline float interpolatePotential(Vector3 pos) const {
-BaseGrid.h- // Find the home node.
-BaseGrid.h- Vector3 l = basisInv.transform(pos - origin);
---
-BaseGrid.h-
-BaseGrid.h- // out of grid? return 0
-BaseGrid.h: // RBTODO
-BaseGrid.h-
-BaseGrid.h- // Get the array jumps.
-BaseGrid.h- int jump[3];
-BaseGrid.h- jump[0] = nz*ny;
---
-BaseGrid.h- // Find the values at the neighbors.
-BaseGrid.h- float g1[4][4][4];
-BaseGrid.h: //RBTODO parallelize?
-BaseGrid.h- for (int ix = 0; ix < 4; ix++) {
-BaseGrid.h- for (int iy = 0; iy < 4; iy++) {
-BaseGrid.h- for (int iz = 0; iz < 4; iz++) {
-BaseGrid.h- // Wrap around the periodic boundaries.
---
-ComputeGridGrid.cuh- Matrix3 basis_rho, Vector3 origin_rho,
-ComputeGridGrid.cuh- Matrix3 basis_u, Vector3 origin_u) {
-ComputeGridGrid.cuh: // RBTODO http://devblogs.nvidia.com/parallelforall/cuda-pro-tip-write-flexible-kernels-grid-stride-loops/
-ComputeGridGrid.cuh- const unsigned int r_id = blockIdx.x * blockDim.x + threadIdx.x;
-ComputeGridGrid.cuh-
-ComputeGridGrid.cuh: // RBTODO parallelize transform
-ComputeGridGrid.cuh- if (r_id > rho->size) // skip threads with no data
-ComputeGridGrid.cuh- return;
-ComputeGridGrid.cuh-
-ComputeGridGrid.cuh- // Maybe: Tile grid data into shared memory
-ComputeGridGrid.cuh: // RBTODO: think about localizing regions of grid data
-ComputeGridGrid.cuh- Vector3 p = rho->getPosition(r_id, basis, origin);
-ComputeGridGrid.cuh- float val = rho->val[r_id];
-ComputeGridGrid.cuh-
-ComputeGridGrid.cuh: // RBTODO reduce forces and torques
-ComputeGridGrid.cuh- // http://www.cuvilib.com/Reduction.pdf
-ComputeGridGrid.cuh-
-ComputeGridGrid.cuh: // RBTODO combine interp methods and reduce repetition!
-ComputeGridGrid.cuh- float energy = u->interpolatePotential(p);
-ComputeGridGrid.cuh- Vector3 f = u->interpolateForceD(p);
-ComputeGridGrid.cuh- Vector3 t = cross(p,f); // test if sign is correct!
-ComputeGridGrid.cuh-
-ComputeGridGrid.cuh: // RBTODO 3rd-law forces + torques
-ComputeGridGrid.cuh-}
---
-Configuration.cpp- cudaMemcpyHostToDevice));
-Configuration.cpp- }
-Configuration.cpp: // RBTODO: moved this out of preceding loop; was that correct?
-Configuration.cpp- gpuErrchk(cudaMemcpyAsync(part_d, part_addr, sizeof(BrownianParticleType*) * numParts,
-Configuration.cpp- cudaMemcpyHostToDevice));
-Configuration.cpp-
-Configuration.cpp-
---
-Configuration.cpp- sz = sizeof(float) * len;
-Configuration.cpp- gpuErrchk(cudaMemcpy( tmpData, g->val, sz, cudaMemcpyHostToDevice));
-Configuration.cpp: // RBTODO: why can't this be deleted?
-Configuration.cpp- // delete[] tmpData;
-Configuration.cpp- }
-Configuration.cpp- }
-Configuration.cpp-
---
-Configuration.cpp- sz = sizeof(float) * len;
-Configuration.cpp- gpuErrchk(cudaMemcpy( tmpData, g->val, sz, cudaMemcpyHostToDevice));
-Configuration.cpp: // RBTODO: why can't this be deleted?
-Configuration.cpp- // delete[] tmpData;
-Configuration.cpp- }
-Configuration.cpp-
-Configuration.cpp- }
---
-RigidBodyGrid.h- \===============================*/
-RigidBodyGrid.h-
-RigidBodyGrid.h: // RBTODO Fix?
-RigidBodyGrid.h- RigidBodyGrid(); // cmaffeo2 (2015) moved this out of protected, cause I wanted RigidBodyGrid in a struct
-RigidBodyGrid.h- // The most obvious of constructors.
-RigidBodyGrid.h- RigidBodyGrid(int nx0, int ny0, int nz0);
-RigidBodyGrid.h-
---
-RigidBodyGrid.h- float a0, a1, a2, a3;
-RigidBodyGrid.h-
-RigidBodyGrid.h: // RBTODO further parallelize loops? unlikely?
-RigidBodyGrid.h-
-RigidBodyGrid.h- // Mix along x, taking the derivative.
-RigidBodyGrid.h- float g2[4][4];
-RigidBodyGrid.h- for (int iy = 0; iy < 4; iy++) {
---
-RigidBodyGrid.h-
-RigidBodyGrid.h- // out of grid? return 0
-RigidBodyGrid.h: // RBTODO
-RigidBodyGrid.h-
-RigidBodyGrid.h- // Get the array jumps.
-RigidBodyGrid.h- int jump[3];
-RigidBodyGrid.h- jump[0] = nz*ny;
---
-RigidBodyGrid.h- w[2] = l.z - homeZ;
-RigidBodyGrid.h- // Find the values at the neighbors.
-RigidBodyGrid.h: float g1[4][4][4]; /* RBTODO: inefficient for my algorithm? */
-RigidBodyGrid.h- for (int ix = 0; ix < 4; ix++) {
-RigidBodyGrid.h- int jx = ix-1 + home[0];
-RigidBodyGrid.h- for (int iy = 0; iy < 4; iy++) {
-RigidBodyGrid.h- int jy = iy-1 + home[1];
---
-RigidBodyGrid.h- // Assume zero value at edges
-RigidBodyGrid.h- int jz = iz-1 + home[2];
-RigidBodyGrid.h: // RBTODO: possible branch divergence in warp?
-RigidBodyGrid.h- if (jx < 0 || jy < 0 || jz < 0 ||
-RigidBodyGrid.h- jx >= nx || jz >= nz || jz >= nz) {
-RigidBodyGrid.h- g1[ix][iy][iz] = 0;
-RigidBodyGrid.h- } else {
---
-RigidBodyGrid.h- // Find the values at the neighbors.
-RigidBodyGrid.h- float g1[4][4][4];
-RigidBodyGrid.h: //RBTODO parallelize?
-RigidBodyGrid.h- for (int ix = 0; ix < 4; ix++) {
-RigidBodyGrid.h- for (int iy = 0; iy < 4; iy++) {
-RigidBodyGrid.h- for (int iz = 0; iz < 4; iz++) {
-RigidBodyGrid.h- // Wrap around the periodic boundaries.
diff --git a/Angle.cu b/src/Angle.cu
similarity index 100%
rename from Angle.cu
rename to src/Angle.cu
diff --git a/Angle.h b/src/Angle.h
similarity index 100%
rename from Angle.h
rename to src/Angle.h
diff --git a/BaseGrid.cu b/src/BaseGrid.cu
similarity index 100%
rename from BaseGrid.cu
rename to src/BaseGrid.cu
diff --git a/BaseGrid.h b/src/BaseGrid.h
similarity index 100%
rename from BaseGrid.h
rename to src/BaseGrid.h
diff --git a/BrownianParticle.cu b/src/BrownianParticle.cu
similarity index 100%
rename from BrownianParticle.cu
rename to src/BrownianParticle.cu
diff --git a/BrownianParticle.h b/src/BrownianParticle.h
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rename from BrownianParticle.h
rename to src/BrownianParticle.h
diff --git a/BrownianParticleType.cpp b/src/BrownianParticleType.cpp
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rename from BrownianParticleType.cpp
rename to src/BrownianParticleType.cpp
diff --git a/BrownianParticleType.h b/src/BrownianParticleType.h
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rename from BrownianParticleType.h
rename to src/BrownianParticleType.h
diff --git a/CellDecomposition.cu b/src/CellDecomposition.cu
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rename from CellDecomposition.cu
rename to src/CellDecomposition.cu
diff --git a/CellDecomposition.h b/src/CellDecomposition.h
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rename from CellDecomposition.h
rename to src/CellDecomposition.h
diff --git a/ComputeForce.cu b/src/ComputeForce.cu
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rename from ComputeForce.cu
rename to src/ComputeForce.cu
diff --git a/ComputeForce.cuh b/src/ComputeForce.cuh
similarity index 100%
rename from ComputeForce.cuh
rename to src/ComputeForce.cuh
diff --git a/ComputeForce.h b/src/ComputeForce.h
similarity index 100%
rename from ComputeForce.h
rename to src/ComputeForce.h
diff --git a/ComputeGridGrid.cu b/src/ComputeGridGrid.cu
similarity index 100%
rename from ComputeGridGrid.cu
rename to src/ComputeGridGrid.cu
diff --git a/ComputeGridGrid.cuh b/src/ComputeGridGrid.cuh
similarity index 100%
rename from ComputeGridGrid.cuh
rename to src/ComputeGridGrid.cuh
diff --git a/ComputeJustForce.h b/src/ComputeJustForce.h
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rename from ComputeJustForce.h
rename to src/ComputeJustForce.h
diff --git a/Configuration.cpp b/src/Configuration.cpp
similarity index 100%
rename from Configuration.cpp
rename to src/Configuration.cpp
diff --git a/Configuration.h b/src/Configuration.h
similarity index 100%
rename from Configuration.h
rename to src/Configuration.h
diff --git a/CudaUtil.cu b/src/CudaUtil.cu
similarity index 100%
rename from CudaUtil.cu
rename to src/CudaUtil.cu
diff --git a/CudaUtil.cuh b/src/CudaUtil.cuh
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rename from CudaUtil.cuh
rename to src/CudaUtil.cuh
diff --git a/DcdWriter.h b/src/DcdWriter.h
similarity index 100%
rename from DcdWriter.h
rename to src/DcdWriter.h
diff --git a/Debug.h b/src/Debug.h
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rename from Debug.h
rename to src/Debug.h
diff --git a/Dihedral.cu b/src/Dihedral.cu
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rename from Dihedral.cu
rename to src/Dihedral.cu
diff --git a/Dihedral.h b/src/Dihedral.h
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rename from Dihedral.h
rename to src/Dihedral.h
diff --git a/Exclude.cu b/src/Exclude.cu
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rename from Exclude.cu
rename to src/Exclude.cu
diff --git a/Exclude.h b/src/Exclude.h
similarity index 100%
rename from Exclude.h
rename to src/Exclude.h
diff --git a/FlowForce.cpp b/src/FlowForce.cpp
similarity index 100%
rename from FlowForce.cpp
rename to src/FlowForce.cpp
diff --git a/FlowForce.h b/src/FlowForce.h
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rename from FlowForce.h
rename to src/FlowForce.h
diff --git a/GPUController.h b/src/GPUController.h
similarity index 100%
rename from GPUController.h
rename to src/GPUController.h
diff --git a/GPUManager.cpp b/src/GPUManager.cpp
similarity index 100%
rename from GPUManager.cpp
rename to src/GPUManager.cpp
diff --git a/GPUManager.h b/src/GPUManager.h
similarity index 100%
rename from GPUManager.h
rename to src/GPUManager.h
diff --git a/GrandBrownTown.cu b/src/GrandBrownTown.cu
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rename from GrandBrownTown.cu
rename to src/GrandBrownTown.cu
diff --git a/GrandBrownTown.cuh b/src/GrandBrownTown.cuh
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rename from GrandBrownTown.cuh
rename to src/GrandBrownTown.cuh
diff --git a/GrandBrownTown.h b/src/GrandBrownTown.h
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rename from GrandBrownTown.h
rename to src/GrandBrownTown.h
diff --git a/JamesBond.cu b/src/JamesBond.cu
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rename from JamesBond.cu
rename to src/JamesBond.cu
diff --git a/JamesBond.h b/src/JamesBond.h
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rename from JamesBond.h
rename to src/JamesBond.h
diff --git a/Makefile b/src/Makefile
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rename from Makefile
rename to src/Makefile
diff --git a/OverlordGrid.h b/src/OverlordGrid.h
similarity index 100%
rename from OverlordGrid.h
rename to src/OverlordGrid.h
diff --git a/Random.h b/src/Random.h
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rename from Random.h
rename to src/Random.h
diff --git a/RandomCPU.h b/src/RandomCPU.h
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rename from RandomCPU.h
rename to src/RandomCPU.h
diff --git a/RandomCUDA.cu b/src/RandomCUDA.cu
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rename from RandomCUDA.cu
rename to src/RandomCUDA.cu
diff --git a/RandomCUDA.h b/src/RandomCUDA.h
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rename from RandomCUDA.h
rename to src/RandomCUDA.h
diff --git a/RandomGsl.h b/src/RandomGsl.h
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rename from RandomGsl.h
rename to src/RandomGsl.h
diff --git a/Reader.h b/src/Reader.h
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rename from Reader.h
rename to src/Reader.h
diff --git a/Reservoir.cu b/src/Reservoir.cu
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rename from Reservoir.cu
rename to src/Reservoir.cu
diff --git a/Reservoir.h b/src/Reservoir.h
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rename from Reservoir.h
rename to src/Reservoir.h
diff --git a/RigidBody.cu b/src/RigidBody.cu
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rename from RigidBody.cu
rename to src/RigidBody.cu
diff --git a/RigidBody.h b/src/RigidBody.h
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rename from RigidBody.h
rename to src/RigidBody.h
diff --git a/RigidBodyController.cu b/src/RigidBodyController.cu
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rename from RigidBodyController.cu
rename to src/RigidBodyController.cu
diff --git a/RigidBodyController.h b/src/RigidBodyController.h
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rename from RigidBodyController.h
rename to src/RigidBodyController.h
diff --git a/RigidBodyGrid.cu b/src/RigidBodyGrid.cu
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rename from RigidBodyGrid.cu
rename to src/RigidBodyGrid.cu
diff --git a/RigidBodyGrid.h b/src/RigidBodyGrid.h
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