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Commit e8fde2fd authored by pinyili2's avatar pinyili2
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modify reading pandas way

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mrdna/readers/segmentmodel_from_oxdna.py
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...@@ -114,7 +114,7 @@ def mrdna_model_from_oxdna(coordinate_file, topology_file,virt2nuc=None,get_nt_p ...@@ -114,7 +114,7 @@ def mrdna_model_from_oxdna(coordinate_file, topology_file,virt2nuc=None,get_nt_p
for i in nt_prop.index: for i in nt_prop.index:
if nt_prop.loc[i]["threeprime"] in nt_prop.index: if nt_prop.loc[i]["threeprime"] in nt_prop.index:
if nt_prop.loc[nt_prop.loc[i]["threeprime"]]["vh"]!=nt_prop.loc[i]["vh"]: if nt_prop.loc[nt_prop.loc[i]["threeprime"]]["vh"]!=nt_prop.loc[i]["vh"]:
nt_prop["stack"][i]=-1 nt_prop.loc[i]["stack"]=-1
bp=-np.ones(len(nt_prop.index),dtype=int) bp=-np.ones(len(nt_prop.index),dtype=int)
counter=0 counter=0
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