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mrdna
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e8fde2fd
Commit
e8fde2fd
authored
1 month ago
by
pinyili2
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modify reading pandas way
parent
e122ade1
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mrdna/readers/segmentmodel_from_oxdna.py
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mrdna/readers/segmentmodel_from_oxdna.py
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mrdna/readers/segmentmodel_from_oxdna.py
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View file @
e8fde2fd
...
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@@ -114,7 +114,7 @@ def mrdna_model_from_oxdna(coordinate_file, topology_file,virt2nuc=None,get_nt_p
for
i
in
nt_prop
.
index
:
if
nt_prop
.
loc
[
i
][
"
threeprime
"
]
in
nt_prop
.
index
:
if
nt_prop
.
loc
[
nt_prop
.
loc
[
i
][
"
threeprime
"
]][
"
vh
"
]
!=
nt_prop
.
loc
[
i
][
"
vh
"
]:
nt_prop
[
"
stack
"
]
[
i
]
=-
1
nt_prop
.
loc
[
i
]
[
"
stack
"
]
=-
1
bp
=-
np
.
ones
(
len
(
nt_prop
.
index
),
dtype
=
int
)
counter
=
0
...
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