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Commit e8fde2fd authored by pinyili2's avatar pinyili2
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modify reading pandas way

parent e122ade1
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......@@ -114,7 +114,7 @@ def mrdna_model_from_oxdna(coordinate_file, topology_file,virt2nuc=None,get_nt_p
for i in nt_prop.index:
if nt_prop.loc[i]["threeprime"] in nt_prop.index:
if nt_prop.loc[nt_prop.loc[i]["threeprime"]]["vh"]!=nt_prop.loc[i]["vh"]:
nt_prop["stack"][i]=-1
nt_prop.loc[i]["stack"]=-1
bp=-np.ones(len(nt_prop.index),dtype=int)
counter=0
......
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