Added temperature argument to mrdna

bin/mrdna

@@ -26,6 +26,12 @@ parser.add_argument('-g','--gpu', type=int, default=0,
 parser.add_argument('--debye-length', type=float, default=None,
                     help='Adjust the electrostatic repulsion matching osmotic pressure data from Rau and Parsegian under 25 mM MgCl2 condition with a Debye-Hueckel correction from the default 11.1 Angstroms.')
 
+parser.add_argument('--temperature', type=float, default=295,
+                    help='Temperature in Kelvin.')
+
+parser.add_argument('--sequence-file', type=str, default=None,
+                    help='Sequence of longest strand.')
+
 parser.add_argument('--output-period', type=float, default=1e4,
                     help='Simulation steps between DCD frames')
 # parser.add_argument('--minimization-steps', type=float, default=0,
@@ -83,7 +89,7 @@ def main():
         from mrdna.readers import read_atomic_pdb as read_model
     else:
         raise Exception("Unrecognized input file '{}'".format(infile))
-    model = read_model( str(infile), debye_length=args.debye_length )
+    model = read_model( str(infile), debye_length=args.debye_length, temperature=args.temperature )
 
     if args.output_prefix is not None:
         prefix = args.output_prefix