Pass oxdna arguments during minimization

mrdna/simulate.py

@@ -28,13 +28,15 @@ def minimize_and_simulate_oxdna( model,
         top = "{}-oxdna.top".format(output_name)
         model._write_oxdna_topology(top)
 
+        min_args = {k:v for k,v in oxdna_args.items() if k != "sim_type"}
+
         top,conf = model.simulate_oxdna(output_name = "{}-oxdna-min".format(output_name),
                                         topology = top,
                                         sim_type = "min",
                                         num_steps = num_min_steps,
                                         print_conf_interval = 100,
                                         print_energy_every = 10,
-        )
+                                        **min_args)
 
         model.simulate_oxdna(output_name = "{}-oxdna".format(output_name),
                              topology = top,