Commit 2c518f1a authored by cmaffeo2's avatar cmaffeo2
Browse files

Generalized stack selection in pdb reader

parent 63c45e3f
......@@ -25,7 +25,7 @@ complement = dict(A='T', C='G', T='A', G='C')
refUnis = {b:mda.Universe(get_resource_path("generate-nts/1-w3dna/{}{}.pdb".format(b,complement[b])))
for b in bases}
stack_text = "not name O5' P O1P O2P OP1 OP2 O3' H*"
stack_text = "not name O5' P O1P O2P OP1 OP2 O3' 1H* 2H* 3H* 0H* H*"
ref_name_ids_inv = dict()
for key,val in refUnis.items():
ref_res = val.residues[0]
......
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