help='Ignore bonds beyond this cutoff during 25% of coarse simulation, adding a step to the simulation. Default value of zero implies bonds are not ignored')
help='Ignore bonds beyond this cutoff during 25%% of coarse simulation, adding a step to the simulation. Default value of zero implies bonds are not ignored')
help='Specify a custom persistence length (in nm) for the first 25% of coarse simulation (after coarse-bond-cutoff simulation if specified), adding a step to the simulation')
help='Specify a custom persistence length (in nm) for the first 25%% of coarse simulation (after coarse-bond-cutoff simulation if specified), adding a step to the simulation')
help='Set the distance (in Angstroms) beyond which crossovers between helix ends are converted to intrahelical connections; a negative value means no crossovers will be converted')