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whuie2
experiment-control
Commits
80145555
Commit
80145555
authored
Jan 04, 2022
by
Yb Tweezer
Browse files
upkeep (dirty)
parent
0c20562d
Changes
4
Hide whitespace changes
Inline
Side-by-side
blue_fluorescence_green_mot_shim_scan.py
View file @
80145555
...
...
@@ -29,9 +29,9 @@ camera_config = {
clk_freq
=
10e6
# Hz
t0
=
1.0
# take the picture
tau
=
50e-3
SHIMS_LR
=
np
.
linspace
(
0
,
2
,
1
6
)
# LeftRight
SHIMS_LR
=
np
.
linspace
(
0
,
2
,
1
)
# LeftRight
SHIMS_FB
=
np
.
linspace
(
2
,
2
,
1
)
# FrontBack
SHIMS_UD
=
np
.
linspace
(
0
,
2
,
1
6
)
# UpDown
SHIMS_UD
=
np
.
linspace
(
0
,
2
,
1
)
# UpDown
def
make_sequence
(
name
:
str
,
shim_fb
:
float
,
shim_lr
:
float
,
shim_ud
:
float
):
SEQ
=
SuperSequence
(
outdir
.
joinpath
(
"sequences"
),
name
,
{
"Sequence"
:
(
Sequence
...
...
@@ -108,13 +108,13 @@ def make_sequence(name: str, shim_fb: float, shim_lr: float, shim_ud: float):
.
digital_hilo
(
*
C
.
mot3_green_sh
,
t0
-
10e-3
,
t0
+
tau
)
).
with_color
(
"C6"
).
with_stack_idx
(
7
),
"Blue tweezer shutter"
:
(
Sequence
.
digital_pulse
(
*
C
.
probe_sh
,
t0
-
5e-3
+
30e-3
,
15e-3
)
).
with_color
(
"C4"
).
with_stack_idx
(
3
),
#
"Blue tweezer shutter": (Sequence
#
.digital_pulse(*C.probe_sh, t0 - 5e-3 + 30e-3, 15e-3)
#
).with_color("C4").with_stack_idx(3),
"Blue tweezer aom"
:
(
Sequence
.
digital_pulse
(
*
C
.
probe_aom
,
t0
+
30e-3
,
10e-3
)
).
with_color
(
"C4"
).
with_stack_idx
(
3
),
#
"Blue tweezer aom": (Sequence
#
.digital_pulse(*C.probe_aom, t0 + 30e-3 , 10e-3)
#
).with_color("C4").with_stack_idx(3),
# "EMCCD": (Sequence
# .digital_pulse(*C.andor_trig, t0 - 27e-3 + 0*30e-3 + 5e-3, 10e-3)
...
...
@@ -197,7 +197,7 @@ class FluorescenceImaging(Controller):
data
.
save
()
for
sseq
in
self
.
ssequences
:
sseq
.
save
()
#
data.render_arrays()
data
.
render_arrays
()
def
run_sequence
(
self
,
*
args
):
for
name
,
seq
in
zip
(
self
.
names
,
self
.
sequences
):
...
...
green_mot_ramp.py
View file @
80145555
...
...
@@ -16,7 +16,7 @@ Narrowline cooling
# CAMERA OPTIONS
camera_config
=
{
"exposure_time"
:
1
00
,
"exposure_time"
:
3
00
,
"gain"
:
45.49
,
"gamma"
:
1.25
,
"black_level"
:
5.0
,
...
...
@@ -32,7 +32,7 @@ SEQ = SuperSequence(outdir, "sequence", {
.
with_color
(
"k"
).
with_stack_idx
(
0
)
),
"Camera 1"
:
(
Sequence
.
digital_pulse
(
*
C
.
flir_trig
,
t0
-
5
e-3
,
0.2985e-3
)
.
digital_pulse
(
*
C
.
flir_trig
,
t0
-
10
e-3
,
0.2985e-3
)
.
with_color
(
"C2"
).
with_stack_idx
(
4
)
),
"Camera 2"
:
(
Sequence
...
...
@@ -40,49 +40,97 @@ SEQ = SuperSequence(outdir, "sequence", {
.
with_color
(
"C2"
).
with_stack_idx
(
4
)
),
"Push shutter"
:
(
Sequence
.
digital_lohi
(
*
C
.
push_sh
,
t0
-
10
e-3
-
5e-3
,
t0
+
800e-3
)
.
digital_lohi
(
*
C
.
push_sh
,
t0
-
25
e-3
-
5e-3
,
t0
+
800e-3
)
.
with_color
(
"C3"
).
with_stack_idx
(
3
)
),
"Push aom"
:
(
Sequence
.
digital_lohi
(
*
C
.
push_aom
,
t0
-
1
0
e-3
,
t0
+
800e-3
)
.
digital_lohi
(
*
C
.
push_aom
,
t0
-
1
5
e-3
,
t0
+
800e-3
)
.
with_color
(
"C3"
).
with_stack_idx
(
3
)
),
"MOT servo green MOT"
:
(
Sequence
.
serial_bits_c
(
C
.
mot3_coils_sig
,
t0
-
0.5e-3
,
C
.
mot3_coils_sig
,
t0
,
44182
,
20
,
AD5791_DAC
,
4
,
C
.
mot3_coils_clk
,
C
.
mot3_coils_sync
,
clk_freq
)
).
with_color
(
"C1"
).
with_stack_idx
(
2
),
"MOT servo green CMOT 1"
:
(
Sequence
.
serial_bits_c
(
C
.
mot3_coils_sig
,
t0
+
tau
-
23e-3
,
int
(
44182
*
1.2
),
20
,
AD5791_DAC
,
4
,
C
.
mot3_coils_clk
,
C
.
mot3_coils_sync
,
clk_freq
)
).
with_color
(
"C1"
).
with_stack_idx
(
2
),
"MOT servo green CMOT 2"
:
(
Sequence
.
serial_bits_c
(
C
.
mot3_coils_sig
,
t0
+
tau
-
22e-3
,
int
(
44182
*
1.4
),
20
,
AD5791_DAC
,
4
,
C
.
mot3_coils_clk
,
C
.
mot3_coils_sync
,
clk_freq
)
).
with_color
(
"C1"
).
with_stack_idx
(
2
),
"MOT servo green CMOT 3"
:
(
Sequence
.
serial_bits_c
(
C
.
mot3_coils_sig
,
t0
+
tau
-
21e-3
,
int
(
44182
*
1.6
),
20
,
AD5791_DAC
,
4
,
C
.
mot3_coils_clk
,
C
.
mot3_coils_sync
,
clk_freq
)
).
with_color
(
"C1"
).
with_stack_idx
(
2
),
"MOT servo green CMOT 4"
:
(
Sequence
.
serial_bits_c
(
C
.
mot3_coils_sig
,
t0
+
tau
-
20e-3
,
int
(
44182
*
1.8
),
20
,
AD5791_DAC
,
4
,
C
.
mot3_coils_clk
,
C
.
mot3_coils_sync
,
clk_freq
)
).
with_color
(
"C1"
).
with_stack_idx
(
2
),
"MOT servo blue MOT recapture"
:
(
Sequence
.
serial_bits_c
(
C
.
mot3_coils_sig
,
t0
+
tau
,
C
.
mot3_coils_sig
,
t0
+
tau
-
4e-3
,
441815
,
20
,
AD5791_DAC
,
4
,
C
.
mot3_coils_clk
,
C
.
mot3_coils_sync
,
clk_freq
)
).
with_color
(
"C1"
).
with_stack_idx
(
2
),
"Blue beams "
:
(
Sequence
.
digital_hilo
(
*
C
.
mot3_blue_sh
,
0.0
,
t0
-
4e-3
)
.
digital_hilo
(
*
C
.
mot3_blue_sh
,
0.0
,
t0
-
3e-3
+
0
*
4e-3
)
).
with_color
(
"C0"
).
with_stack_idx
(
5
),
"Blue beams recapture"
:
(
Sequence
.
digital_pulse
(
*
C
.
mot3_blue_sh
,
t0
+
tau
,
700e-3
)
.
digital_pulse
(
*
C
.
mot3_blue_sh
,
t0
+
tau
-
4e-3
,
700e-3
)
).
with_color
(
"C0"
).
with_stack_idx
(
5
),
"FB/LR shims"
:
(
Sequence
()
<<
Event
.
analog
(
**
C
.
shim_coils_fb
,
s
=
0.0
)
@
(
t0
-
0.5e-3
+
1e-16
)
<<
Event
.
analog
(
**
C
.
shim_coils_fb
,
s
=
3.45
)
@
(
t0
+
tau
+
1e-16
)
<<
Event
.
analog
(
**
C
.
shim_coils_lr
,
s
=
0.0
)
@
(
t0
-
0.5e-3
+
2e-16
)
<<
Event
.
analog
(
**
C
.
shim_coils_fb
,
s
=
2.0
)
@
(
t0
+
1e-16
)
<<
Event
.
analog
(
**
C
.
shim_coils_lr
,
s
=
0.0
)
@
(
t0
+
2e-16
)
<<
Event
.
analog
(
**
C
.
shim_coils_ud
,
s
=
0.5
)
@
(
t0
+
3e-16
)
<<
Event
.
analog
(
**
C
.
shim_coils_fb
,
s
=
4.50
)
@
(
t0
+
tau
+
1e-16
)
<<
Event
.
analog
(
**
C
.
shim_coils_lr
,
s
=
2.20
)
@
(
t0
+
tau
+
2e-16
)
<<
Event
.
analog
(
**
C
.
shim_coils_ud
,
s
=
0.
0
)
@
(
t0
-
0.5e-3
+
3e-16
)
<<
Event
.
analog
(
**
C
.
shim_coils_ud
,
s
=
3.75
)
@
(
t0
+
tau
+
3e-16
)
<<
Event
.
analog
(
**
C
.
shim_coils_ud
,
s
=
4.3
0
)
@
(
t0
+
tau
+
3e-16
)
).
with_color
(
"C8"
),
"Green beams AOM"
:
(
Sequence
.
digital_hilo
(
*
C
.
mot3_green_aom
,
t0
-
15e-3
,
t0
-
10e-3
)
).
with_color
(
"C6"
).
with_stack_idx
(
6
),
"Green beams shutter"
:
(
Sequence
.
digital_hilo
(
*
C
.
mot3_green_sh
,
t0
-
1
e-3
,
t0
+
tau
)
.
digital_hilo
(
*
C
.
mot3_green_sh
,
t0
-
5
e-3
,
t0
+
tau
+
3e-3
)
).
with_color
(
"C6"
).
with_stack_idx
(
7
),
"Green imaging AOM"
:
(
Sequence
.
digital_hilo
(
*
C
.
raman_green_aom
,
t0
+
tau
+
5e-3
,
t0
+
tau
+
15e-3
)
).
with_color
(
"C6"
).
with_stack_idx
(
6
),
# "Blue tweezer shutter": (Sequence
# .digital_pulse(*C.probe_sh, t0 - 5e-3 + 0e-3, 15e-3)
# ).with_color("C4").with_stack_idx(3),
# "Blue tweezer aom": (Sequence
# .digital_pulse(*C.probe_aom, t0 + 0e-3 , 10e-3)
# ).with_color("C4").with_stack_idx(3),
# "EMCCD": (Sequence
# .digital_pulse(*C.andor_trig, t0 + tau -27e-3 - 14e-3, 10e-3)
# ).with_color("C2").with_stack_idx(4),
"Scope"
:
(
Sequence
.
digital_hilo
(
*
C
.
scope_trig
,
t0
-
50e-3
,
t0
+
800e-3
)
.
with_color
(
"C7"
).
with_stack_idx
(
1
)
...
...
@@ -131,9 +179,9 @@ class FluorescenceImaging(Controller):
)
ramp_time
=
30e-3
# in s
ramp_N
=
1000
# 10 us between each step
ramp_N
=
1000
delta_t
=
ramp_time
/
ramp_N
ramp_range
=
5
# MHz
ramp_range
=
4
# MHz
f0
=
90
# MHz
delta_f
=
ramp_range
/
ramp_N
freq
=
f0
+
np
.
arange
(
0
,
ramp_N
+
1
)
*
delta_f
...
...
@@ -142,9 +190,10 @@ class FluorescenceImaging(Controller):
t_ref
=
10e-3
t_ramp
=
t_ref
+
20e-3
t_hold
=
20e-3
table
<<
mogdriver
.
MOGEvent
(
frequency
=
f0
,
power
=
0
)
@
(
1e-4
)
table
<<
mogdriver
.
MOGEvent
(
frequency
=
f0
,
power
=
29.0
)
@
(
t_ref
)
for
ind
,
value
in
enumerate
(
freq
):
table
<<
mogdriver
.
MOGEvent
(
frequency
=
value
,
power
=
29.0
)
@
(
t_ramp
+
ind
*
delta_t
)
table
<<
mogdriver
.
MOGEvent
(
frequency
=
value
,
power
=
29.0
-
ind
*
0.015
)
@
(
t_ramp
+
ind
*
delta_t
)
table
<<
mogdriver
.
MOGEvent
(
frequency
=
value
,
power
=
0.0
)
@
(
t_ramp
+
ind
*
delta_t
+
t_hold
)
...
...
green_mot_ramp_shim_scan.py
0 → 100644
View file @
80145555
from
lib
import
*
from
lib
import
CONNECTIONS
as
C
import
datetime
,
sys
,
pathlib
from
lib.system
import
MOGRF
import
time
import
numpy
as
np
timestamp
=
get_timestamp
()
print
(
timestamp
)
outdir
=
DATADIRS
.
compressed_mot
.
joinpath
(
timestamp
)
comments
=
"""
Narrowline cooling
w/o blue tweezer
================================
"""
[
1
:
-
1
]
# CAMERA OPTIONS
camera_config
=
{
"exposure_time"
:
300
,
"gain"
:
45.49
,
"gamma"
:
1.25
,
"black_level"
:
5.0
,
"bin_size"
:
1
,
}
clk_freq
=
10e6
# Hz
t0
=
2.0
# cooling seq
tau
=
70e-3
SHIMS_LR
=
np
.
linspace
(
0.2
,
0.2
,
1
)
# LeftRight
SHIMS_FB
=
np
.
linspace
(
2.2
,
2.2
,
1
)
# FrontBack
SHIMS_UD
=
np
.
linspace
(
0.7
,
0.7
,
1
)
# UpDown
def
make_sequence
(
name
:
str
,
shim_fb
:
float
,
shim_lr
:
float
,
shim_ud
:
float
):
name
=
f
"fb=
{
shim_fb
:.
5
f
}
_lr=
{
shim_lr
:.
5
f
}
_ud=
{
shim_ud
:.
5
f
}
"
\
if
name
is
None
else
name
SEQ
=
SuperSequence
(
outdir
.
joinpath
(
"sequences"
),
name
,
{
"Sequence"
:
(
Sequence
.
digital_hilo
(
*
C
.
dummy
,
0.0
,
t0
+
800e-3
)
.
with_color
(
"k"
).
with_stack_idx
(
0
)
),
"Camera 1"
:
(
Sequence
.
digital_pulse
(
*
C
.
flir_trig
,
t0
-
10e-3
,
0.2985e-3
)
.
with_color
(
"C2"
).
with_stack_idx
(
4
)
),
"Camera 2"
:
(
Sequence
.
digital_pulse
(
*
C
.
flir_trig
,
t0
+
80e-3
,
0.2985e-3
)
.
with_color
(
"C2"
).
with_stack_idx
(
4
)
),
"Push shutter"
:
(
Sequence
.
digital_lohi
(
*
C
.
push_sh
,
t0
-
25e-3
-
5e-3
,
t0
+
800e-3
)
.
with_color
(
"C3"
).
with_stack_idx
(
3
)
),
"Push aom"
:
(
Sequence
.
digital_lohi
(
*
C
.
push_aom
,
t0
-
15e-3
,
t0
+
800e-3
)
.
with_color
(
"C3"
).
with_stack_idx
(
3
)
),
"MOT servo green MOT"
:
(
Sequence
.
serial_bits_c
(
C
.
mot3_coils_sig
,
t0
,
44182
,
20
,
AD5791_DAC
,
4
,
C
.
mot3_coils_clk
,
C
.
mot3_coils_sync
,
clk_freq
)
).
with_color
(
"C1"
).
with_stack_idx
(
2
),
"MOT servo green CMOT 1"
:
(
Sequence
.
serial_bits_c
(
C
.
mot3_coils_sig
,
t0
+
tau
-
23e-3
,
int
(
44182
*
1.2
),
20
,
AD5791_DAC
,
4
,
C
.
mot3_coils_clk
,
C
.
mot3_coils_sync
,
clk_freq
)
).
with_color
(
"C1"
).
with_stack_idx
(
2
),
"MOT servo green CMOT 2"
:
(
Sequence
.
serial_bits_c
(
C
.
mot3_coils_sig
,
t0
+
tau
-
22e-3
,
int
(
44182
*
1.4
),
20
,
AD5791_DAC
,
4
,
C
.
mot3_coils_clk
,
C
.
mot3_coils_sync
,
clk_freq
)
).
with_color
(
"C1"
).
with_stack_idx
(
2
),
"MOT servo green CMOT 3"
:
(
Sequence
.
serial_bits_c
(
C
.
mot3_coils_sig
,
t0
+
tau
-
21e-3
,
int
(
44182
*
1.6
),
20
,
AD5791_DAC
,
4
,
C
.
mot3_coils_clk
,
C
.
mot3_coils_sync
,
clk_freq
)
).
with_color
(
"C1"
).
with_stack_idx
(
2
),
"MOT servo green CMOT 4"
:
(
Sequence
.
serial_bits_c
(
C
.
mot3_coils_sig
,
t0
+
tau
-
20e-3
,
int
(
44182
*
1.8
),
20
,
AD5791_DAC
,
4
,
C
.
mot3_coils_clk
,
C
.
mot3_coils_sync
,
clk_freq
)
).
with_color
(
"C1"
).
with_stack_idx
(
2
),
"MOT servo blue MOT recapture"
:
(
Sequence
.
serial_bits_c
(
C
.
mot3_coils_sig
,
t0
+
tau
-
4e-3
,
441815
,
20
,
AD5791_DAC
,
4
,
C
.
mot3_coils_clk
,
C
.
mot3_coils_sync
,
clk_freq
)
).
with_color
(
"C1"
).
with_stack_idx
(
2
),
"Blue beams "
:
(
Sequence
.
digital_hilo
(
*
C
.
mot3_blue_sh
,
0.0
,
t0
-
3e-3
+
0
*
4e-3
)
).
with_color
(
"C0"
).
with_stack_idx
(
5
),
"Blue beams recapture"
:
(
Sequence
.
digital_pulse
(
*
C
.
mot3_blue_sh
,
t0
+
tau
-
4e-3
,
700e-3
)
).
with_color
(
"C0"
).
with_stack_idx
(
5
),
"FB/LR/UD shims"
:
(
Sequence
()
<<
Event
.
analog
(
**
C
.
shim_coils_fb
,
s
=
2.0
)
@
(
t0
+
1e-16
)
<<
Event
.
analog
(
**
C
.
shim_coils_lr
,
s
=
0.0
)
@
(
t0
+
2e-16
)
<<
Event
.
analog
(
**
C
.
shim_coils_ud
,
s
=
0.5
)
@
(
t0
+
3e-16
)
<<
Event
.
analog
(
**
C
.
shim_coils_fb
,
s
=
shim_fb
)
@
(
t0
+
tau
-
20.5e-3
+
1e-16
)
<<
Event
.
analog
(
**
C
.
shim_coils_lr
,
s
=
shim_lr
)
@
(
t0
+
tau
-
20.5e-3
+
2e-16
)
<<
Event
.
analog
(
**
C
.
shim_coils_ud
,
s
=
shim_ud
)
@
(
t0
+
tau
-
20.5e-3
+
3e-16
)
<<
Event
.
analog
(
**
C
.
shim_coils_fb
,
s
=
4.50
)
@
(
t0
+
tau
+
0e-3
+
1e-16
)
<<
Event
.
analog
(
**
C
.
shim_coils_lr
,
s
=
2.20
)
@
(
t0
+
tau
+
0e-3
+
2e-16
)
<<
Event
.
analog
(
**
C
.
shim_coils_ud
,
s
=
4.30
)
@
(
t0
+
tau
+
0e-3
+
3e-16
)
).
with_color
(
"C8"
),
"Green beams AOM"
:
(
Sequence
.
digital_hilo
(
*
C
.
mot3_green_aom
,
t0
-
15e-3
,
t0
-
10e-3
)
).
with_color
(
"C6"
).
with_stack_idx
(
6
),
"Green beams shutter"
:
(
Sequence
.
digital_hilo
(
*
C
.
mot3_green_sh
,
t0
-
5e-3
,
t0
+
tau
)
).
with_color
(
"C6"
).
with_stack_idx
(
7
),
# "Green imaging AOM": (Sequence
# .digital_hilo(*C.raman_green, t0 + tau + 10e-3, t0 + tau + 20e-3 )
# ).with_color("C6").with_stack_idx(6),
# "Blue tweezer shutter": (Sequence
# .digital_pulse(*C.probe_sh, t0 + tau - 15e-3, 15e-3)
# ).with_color("C4").with_stack_idx(3),
# "Blue tweezer aom": (Sequence
# .digital_pulse(*C.probe_aom, t0 + tau - 10e-3, 10e-3)
# ).with_color("C4").with_stack_idx(3),
# "EMCCD": (Sequence
# .digital_pulse(*C.andor_trig, t0 + tau - 17e-3, 10e-3)
# ).with_color("C2").with_stack_idx(4),
"Scope"
:
(
Sequence
.
digital_hilo
(
*
C
.
scope_trig
,
t0
-
50e-3
,
t0
+
800e-3
)
.
with_color
(
"C7"
).
with_stack_idx
(
1
)
),
},
C
)
return
SEQ
seq_bkgd
=
SuperSequence
(
outdir
.
joinpath
(
"sequences"
),
f
"background"
,
{
"Sequence"
:
(
Sequence
.
digital_hilo
(
*
C
.
dummy
,
0.0
,
100e-3
)
),
"Push"
:
(
Sequence
.
digital_lohi
(
*
C
.
push_sh
,
0.0
,
100e-3
)
),
"MOT beams"
:
(
Sequence
.
digital_lohi
(
*
C
.
mot3_blue_sh
,
0.0
,
50e-3
)
),
"MOT coils"
:
(
Sequence
.
digital_hilo
(
*
C
.
mot3_coils_igbt
,
0.0
,
100e-3
)
.
digital_hilo
(
*
C
.
mot3_coils_onoff
,
0.0
,
100e-3
)
),
"Camera"
:
(
Sequence
.
digital_pulse
(
*
C
.
flir_trig
,
80e-3
,
camera_config
[
"exposure_time"
]
*
1e-6
)
),
"Scope"
:
(
Sequence
.
digital_hilo
(
*
C
.
scope_trig
,
0.0
,
100e-3
)
),
},
C
)
class
FluorescenceImaging
(
Controller
):
def
precmd
(
self
,
*
args
):
self
.
comp
=
MAIN
.
connect
()
(
self
.
comp
.
def_digital
(
*
C
.
mot3_coils_onoff
,
1
)
.
def_digital
(
*
C
.
mot3_blue_sh
,
1
)
.
def_digital
(
*
C
.
push_aom
,
1
)
.
def_digital
(
*
C
.
push_sh
,
1
)
)
self
.
cam
=
FLIR
.
connect
()
(
self
.
cam
.
configure_capture
(
**
camera_config
)
.
configure_trigger
()
)
self
.
names
=
list
()
self
.
sequences
=
list
()
self
.
ssequences
=
list
()
for
fb
in
SHIMS_FB
:
for
lr
in
SHIMS_LR
:
for
ud
in
SHIMS_UD
:
name
=
f
"fb=
{
fb
:.
5
f
}
_lr=
{
lr
:.
5
f
}
_ud=
{
ud
:.
5
f
}
"
sseq
=
make_sequence
(
name
,
fb
,
lr
,
ud
)
self
.
names
.
append
(
name
)
self
.
sequences
.
append
(
sseq
.
to_sequence
())
self
.
ssequences
.
append
(
sseq
)
ramp_time
=
30e-3
# in s
ramp_N
=
1000
delta_t
=
ramp_time
/
ramp_N
ramp_range
=
4
# MHz
f0
=
90
# MHz
delta_f
=
ramp_range
/
ramp_N
freq
=
f0
+
np
.
arange
(
0
,
ramp_N
+
1
)
*
delta_f
table
=
mogdriver
.
MOGTable
()
t_ref
=
10e-3
t_ramp
=
t_ref
+
20e-3
t_hold
=
20e-3
table
<<
mogdriver
.
MOGEvent
(
frequency
=
f0
,
power
=
29.0
)
@
(
t_ref
)
for
ind
,
value
in
enumerate
(
freq
):
table
<<
mogdriver
.
MOGEvent
(
frequency
=
value
,
power
=
29.0
-
ind
*
0.015
)
@
(
t_ramp
+
ind
*
delta_t
)
table
<<
mogdriver
.
MOGEvent
(
frequency
=
value
,
power
=
0.0
)
@
(
t_ramp
+
ind
*
delta_t
+
t_hold
)
self
.
mog
=
MOGRF
.
connect
()
(
self
.
mog
.
set_frequency
(
1
,
90.0
).
set_power
(
1
,
29.4
)
.
set_mode
(
1
,
"TSB"
)
.
table_load
(
1
,
table
)
.
set_table_rearm
(
1
,
True
)
.
table_arm
(
1
)
)
def
postcmd
(
self
,
*
args
):
self
.
comp
.
clear
().
disconnect
()
self
.
cam
.
disconnect
()
(
self
.
mog
.
table_stop
(
1
)
.
table_clear
(
1
)
.
set_frequency
(
1
,
90.0
).
set_power
(
1
,
29.04
)
.
set_mode
(
1
,
"NSB"
)
.
set_output
(
1
,
True
)
.
disconnect
()
)
arrays
=
dict
()
for
k
,
name
in
enumerate
(
self
.
names
):
arrays
[
name
+
"_0"
]
=
self
.
frames
[
2
*
k
]
arrays
[
name
+
"_1"
]
=
self
.
frames
[
2
*
k
+
1
]
data
=
FluorescenceData
(
outdir
=
outdir
,
arrays
=
arrays
,
config
=
camera_config
,
comments
=
comments
)
data
.
compute_results
()
data
.
save
()
for
sseq
in
self
.
ssequences
:
sseq
.
save
()
data
.
render_arrays
()
def
run_sequence
(
self
,
*
args
):
for
name
,
seq
in
zip
(
self
.
names
,
self
.
sequences
):
print
(
name
)
(
self
.
comp
.
enqueue
(
seq
)
.
run
()
.
clear
()
)
def
run_camera
(
self
,
*
args
):
self
.
frames
=
self
.
cam
.
acquire_frames
(
2
*
len
(
self
.
names
))
def
cmd_visualize
(
self
,
*
args
):
make_sequence
(
""
,
SHIMS_FB
.
max
(),
SHIMS_LR
.
max
(),
SHIMS_UD
.
max
())
\
.
draw_detailed
().
show
().
close
()
sys
.
exit
(
0
)
if
__name__
==
"__main__"
:
FluorescenceImaging
().
RUN
()
\ No newline at end of file
lib/system.py
View file @
80145555
...
...
@@ -19,6 +19,7 @@ DATADIRS = DataPaths(
mot_transfer
=
DATA_HOME
.
joinpath
(
"MOT transfer"
),
green_shim_scan
=
DATA_HOME
.
joinpath
(
"green shim scan"
),
green_mot_fluor
=
DATA_HOME
.
joinpath
(
"blue fluorescence from green mot"
),
compressed_mot
=
DATA_HOME
.
joinpath
(
"compressed mot"
),
)
# DEPRECATED NAMES
...
...
@@ -38,14 +39,14 @@ DATADIRS = DataPaths(
# Analog(channel, state)
CONNECTIONS
=
ConnectionLayout
(
mot3_coils_onoff
=
Digital
(
0
,
2
,
1
),
mot3_coils_cur
=
Analog
(
0
,
3.45
),
mot3_coils_vol
=
Analog
(
1
,
7.0
0
),
mot3_coils_cur
=
Analog
(
0
,
9.90
),
mot3_coils_vol
=
Analog
(
1
,
5.5
0
),
mot3_coils_sig
=
Digital
(
0
,
8
,
0
),
mot3_coils_clk
=
Digital
(
0
,
10
,
0
),
mot3_coils_sync
=
Digital
(
0
,
14
,
1
),
shim_coils_ud
=
Analog
(
2
,
0.0
0
),
shim_coils_lr
=
Analog
(
3
,
0.0
0
),
shim_coils_fb
=
Analog
(
4
,
0.0
0
),
shim_coils_ud
=
Analog
(
2
,
4.3
0
),
shim_coils_lr
=
Analog
(
3
,
2.2
0
),
shim_coils_fb
=
Analog
(
4
,
4.5
0
),
mot3_coils_igbt
=
Digital
(
0
,
4
,
1
),
mot3_shims_onoff
=
Digital
(
0
,
0
,
0
),
mot3_blue_sh
=
Digital
(
1
,
7
,
1
),
...
...
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