Commits · e75f2f0a8227985408a20b690143d6cf5257674f · tbgl / tools / mrdna

17 Aug, 2018 1 commit
- Updated method of adding atomistic DNA nucleotides · e75f2f0a
  cmaffeo2 authored Aug 17, 2018
  
  e75f2f0a
06 Jul, 2018 1 commit
- Fixed crossover angle potentials · 87fc5b22
  cmaffeo2 authored Jul 05, 2018
  
  87fc5b22
03 Jul, 2018 1 commit
- Fixed name of CYT and name of CanonicalNucleotideFactory · 6d46fe1e
  cmaffeo2 authored Jul 03, 2018
  
  6d46fe1e
28 Jun, 2018 1 commit
- Fixed little bugs, should be squashed into previous · cc444b68
  cmaffeo2 authored Jun 28, 2018
  
  cc444b68
15 Jun, 2018 1 commit
- Fixed bug in atomic structure builder · f4406138
  cmaffeo2 authored Jun 15, 2018
  
  f4406138
13 Jun, 2018 1 commit
- Fixed bugs in psf bond writing · dc623af9
  cmaffeo2 authored Jun 13, 2018
  
  dc623af9
04 Apr, 2018 2 commits
- Added position scaling and beta to atoms; centered ssDNA · 9e20fee1
  cmaffeo2 authored Apr 04, 2018
  
  9e20fee1
- Updated arbdmodel writePdb and nucleotide generation · f87c6dfe
  cmaffeo2 authored Apr 03, 2018
  
  f87c6dfe
30 Mar, 2018 1 commit
- Fixed numerous issues; code seems to work · 2161b99c
  cmaffeo2 authored Mar 27, 2018
  
  2161b99c
27 Mar, 2018 1 commit
- Working towards compatibility with cadnano structures; fixed some issues · daa829dd
  cmaffeo2 authored Mar 26, 2018
  
  daa829dd
23 Mar, 2018 2 commits
- Added all-atom model · 27fbc86c
  cmaffeo2 authored Mar 23, 2018
  
  27fbc86c
- Added all-atom model · fca5b912
  cmaffeo2 authored Mar 23, 2018
  
  fca5b912
11 Aug, 2017 1 commit
- Unscaled bases are now fixed during initial minimization, should be more robust · dbaaef73
  cmaffeo2 authored Aug 11, 2017
  
  dbaaef73
18 Jul, 2017 1 commit
- Improved placement of atomistic nts, reduced exclusions for hexagonal lattice push bonds · 79ef8189
  cmaffeo2 authored Jul 18, 2017
  
  79ef8189
13 Jul, 2017 1 commit
- Made ssDNA in atomic model be centered on C3' atom rather than dsDNA center · b74a226a
  cmaffeo2 authored Jul 13, 2017
  
  b74a226a
07 Jul, 2017 1 commit
- Fixed numerous small issues with atomic simulations; works now for pointer · f516c31e
  cmaffeo2 authored Jul 07, 2017
  
  f516c31e
06 Jul, 2017 1 commit
- tmp; imported changes from ../tensegrity-for-liedl.extraBeadModel · fd70af51
  cmaffeo2 authored Jul 06, 2017
  
  fd70af51
31 May, 2017 1 commit
- Fixed assignment of atomic coordinates based on nucleotide position · aa67524b
  cmaffeo2 authored May 24, 2017
  
  aa67524b
05 Apr, 2017 1 commit
- Atomic backmapping now works · bd4ec932
  cmaffeo2 authored Apr 05, 2017
  
  bd4ec932