- 21 Oct, 2021 3 commits
- 28 Sep, 2021 1 commit
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cmaffeo2 authored
Fix multiple issues related to strand generation, also reduce timestep to 100fs if coarse_local_twist==True
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- 02 Mar, 2021 1 commit
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cmaffeo2 authored
Added box_type=orthogonal and CUDA_DEVICE={gpu} to oxDNA input file; thanks to Elija Feigl for bringing the issue to our attention
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- 03 Dec, 2020 1 commit
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cmaffeo2 authored
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- 24 Feb, 2020 1 commit
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cmaffeo2 authored
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- 21 Feb, 2020 1 commit
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cmaffeo2 authored
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- 02 Jan, 2020 1 commit
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cmaffeo2 authored
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- 09 Oct, 2019 1 commit
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cmaffeo2 authored
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- 04 Sep, 2019 1 commit
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cmaffeo2 authored
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- 13 Aug, 2019 2 commits
- 10 Jul, 2019 1 commit
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cmaffeo2 authored
Reduced timestep of high resolution simulations from 50 to 40 fs because of instability in some systems
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- 01 Feb, 2019 1 commit
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cmaffeo2 authored
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- 19 Jan, 2019 1 commit
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cmaffeo2 authored
1) Fixed lattice_type setting for cadnano structures, affecting ENM 2) Raise exception for circular segments (sites that loop such as RNA stem loops remain problematic) 3) Made translate and rotate functions return if nothing is selected by filter
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- 02 Dec, 2018 1 commit
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cmaffeo2 authored
Slightly reorganized simulation protocol; added options to mrdna script and simulate.py for using twist in the coarsest step
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- 04 Nov, 2018 1 commit
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cmaffeo2 authored
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- 20 Sep, 2018 1 commit
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cmaffeo2 authored
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- 17 Sep, 2018 1 commit
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cmaffeo2 authored
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- 10 Sep, 2018 3 commits
- 06 Sep, 2018 1 commit
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cmaffeo2 authored
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- 05 Sep, 2018 2 commits
- 04 Sep, 2018 1 commit
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cmaffeo2 authored
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- 28 Aug, 2018 3 commits
- 20 Jul, 2018 1 commit
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cmaffeo2 authored
Moved run_simulate_protocols outside of cadnano_segments since more modular; increased density of coarsest DNA model
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