diff --git a/mrdna/segmentmodel.py b/mrdna/segmentmodel.py index 7b97f930011eefedb8f49660d42ed05e9bf6352d..54e7f6e511f3830c5683e3bb516f1d84cd580b8d 100644 --- a/mrdna/segmentmodel.py +++ b/mrdna/segmentmodel.py @@ -1569,10 +1569,10 @@ class SegmentModel(ArbdModel): self.DEBUG = DEBUG if DEBUG > 0: print("Building ARBD Model") ArbdModel.__init__(self,segments, - dimensions, origin, - temperature, timestep, cutoff, - decompPeriod, pairlistDistance=None, - nonbondedResolution = 0, + origin, dimensions, + temperature, timestep, integrator, cutoff, + decompPeriod, pairlist_distance=None, + nonbonded_resolution = 0, extra_bd_file_lines = extra_bd_file_lines ) @@ -1705,7 +1705,7 @@ class SegmentModel(ArbdModel): return twist_spring_from_lp(sep, Lp, self.temperature) - def extend(self, other, copy=True, include_strands=False): + def extend(self, other, copy=True, include_strands=True): assert( isinstance(other, SegmentModel) ) try: