From a526f2ac947f95fea8a272d5f26ebeb0f903d1a7 Mon Sep 17 00:00:00 2001
From: Chris Maffeo <cmaffeo2@illinois.edu>
Date: Thu, 12 Dec 2024 12:16:21 -0600
Subject: [PATCH] Move local arbmodel copy to arbdmodel/submodule/arbdmodel
---
mrdna/arbdmodel/{ => submodule/arbdmodel}/LICENSE | 0
mrdna/arbdmodel/{ => submodule/arbdmodel}/README.md | 0
.../arbdmodel/{ => submodule/arbdmodel}/__init__.py | 0
.../{ => submodule/arbdmodel}/abstract_polymer.py | 0
mrdna/arbdmodel/{ => submodule/arbdmodel}/coords.py | 0
.../{ => submodule/arbdmodel}/fjc_polymer_model.py | 0
.../{ => submodule/arbdmodel}/hps_polymer_model.py | 0
.../{ => submodule/arbdmodel}/interactions.py | 0
.../{ => submodule/arbdmodel}/kh_polymer_model.py | 0
.../arbdmodel}/kh_polymer_model_pair_epsilon.py | 0
.../{ => submodule/arbdmodel}/nonbonded.py | 0
.../{ => submodule/arbdmodel}/onck_polymer_model.py | 0
.../resources/charmm36.nbfix/par_all36_na.prm | 0
.../resources/charmm36.nbfix/par_water_ions_na.prm | 0
.../resources/charmm36.nbfix/top_all36_na.rtf | 0
.../arbdmodel}/resources/two_bead_model/BBP.dat | 0
.../arbdmodel}/resources/two_bead_model/BPB.dat | 0
.../arbdmodel}/resources/two_bead_model/BPP.dat | 0
.../arbdmodel}/resources/two_bead_model/NBBB.dat | 0
.../arbdmodel}/resources/two_bead_model/NBPB.dat | 0
.../arbdmodel}/resources/two_bead_model/NBPP.dat | 0
.../resources/two_bead_model/b1p1p2b2.dat | 0
.../arbdmodel}/resources/two_bead_model/b1p2b2.dat | 0
.../arbdmodel}/resources/two_bead_model/b1p2p3.dat | 0
.../resources/two_bead_model/b1p2p3b3.dat | 0
.../diffusion/b-bead.hydropro-pri.bea | 0
.../diffusion/b-bead.hydropro-pri.vrml | 0
.../diffusion/b-bead.hydropro-res.txt | 0
.../diffusion/b-bead.hydropro-sol.txt | Bin
.../resources/two_bead_model/diffusion/b-bead.pdb | 0
.../two_bead_model/diffusion/b.hydropro.dat | 0
.../two_bead_model/diffusion/hydropro-fit.txt | 0
.../two_bead_model/diffusion/hydropro-sum.txt | 0
.../resources/two_bead_model/diffusion/hydropro.dat | 0
.../two_bead_model/diffusion/hydropro10-lnx.exe | 0
.../diffusion/p-bead.hydropro-pri.bea | 0
.../diffusion/p-bead.hydropro-pri.vrml | 0
.../diffusion/p-bead.hydropro-res.txt | 0
.../diffusion/p-bead.hydropro-sol.txt | Bin
.../resources/two_bead_model/diffusion/p-bead.pdb | 0
.../two_bead_model/diffusion/p.hydropro.dat | 0
.../resources/two_bead_model/diffusion/run.sh | 0
.../resources/two_bead_model/p0p1p2p3.dat | 0
.../arbdmodel}/resources/two_bead_model/p1p2b2.dat | 0
.../arbdmodel}/resources/two_bead_model/p1p2p3.dat | 0
.../arbdmodel}/resources/two_bead_model/zeroBBP.dat | 0
.../arbdmodel}/resources/two_bead_model/zeroBPB.dat | 0
.../arbdmodel}/resources/two_bead_model/zeroBPP.dat | 0
.../resources/two_bead_model/zeroNBBB.dat | 0
.../resources/two_bead_model/zeroNBPB.dat | 0
.../resources/two_bead_model/zeroNBPP.dat | 0
.../{ => submodule/arbdmodel}/segmentmodel.py | 0
.../{ => submodule/arbdmodel}/ssdna_two_bead.py | 0
.../arbdmodel/{ => submodule/arbdmodel}/version.py | 0
54 files changed, 0 insertions(+), 0 deletions(-)
rename mrdna/arbdmodel/{ => submodule/arbdmodel}/LICENSE (100%)
rename mrdna/arbdmodel/{ => submodule/arbdmodel}/README.md (100%)
rename mrdna/arbdmodel/{ => submodule/arbdmodel}/__init__.py (100%)
rename mrdna/arbdmodel/{ => submodule/arbdmodel}/abstract_polymer.py (100%)
rename mrdna/arbdmodel/{ => submodule/arbdmodel}/coords.py (100%)
rename mrdna/arbdmodel/{ => submodule/arbdmodel}/fjc_polymer_model.py (100%)
rename mrdna/arbdmodel/{ => submodule/arbdmodel}/hps_polymer_model.py (100%)
rename mrdna/arbdmodel/{ => submodule/arbdmodel}/interactions.py (100%)
rename mrdna/arbdmodel/{ => submodule/arbdmodel}/kh_polymer_model.py (100%)
rename mrdna/arbdmodel/{ => submodule/arbdmodel}/kh_polymer_model_pair_epsilon.py (100%)
rename mrdna/arbdmodel/{ => submodule/arbdmodel}/nonbonded.py (100%)
rename mrdna/arbdmodel/{ => submodule/arbdmodel}/onck_polymer_model.py (100%)
rename mrdna/arbdmodel/{ => submodule/arbdmodel}/resources/charmm36.nbfix/par_all36_na.prm (100%)
rename mrdna/arbdmodel/{ => submodule/arbdmodel}/resources/charmm36.nbfix/par_water_ions_na.prm (100%)
rename mrdna/arbdmodel/{ => submodule/arbdmodel}/resources/charmm36.nbfix/top_all36_na.rtf (100%)
rename mrdna/arbdmodel/{ => submodule/arbdmodel}/resources/two_bead_model/BBP.dat (100%)
rename mrdna/arbdmodel/{ => submodule/arbdmodel}/resources/two_bead_model/BPB.dat (100%)
rename mrdna/arbdmodel/{ => submodule/arbdmodel}/resources/two_bead_model/BPP.dat (100%)
rename mrdna/arbdmodel/{ => submodule/arbdmodel}/resources/two_bead_model/NBBB.dat (100%)
rename mrdna/arbdmodel/{ => submodule/arbdmodel}/resources/two_bead_model/NBPB.dat (100%)
rename mrdna/arbdmodel/{ => submodule/arbdmodel}/resources/two_bead_model/NBPP.dat (100%)
rename mrdna/arbdmodel/{ => submodule/arbdmodel}/resources/two_bead_model/b1p1p2b2.dat (100%)
rename mrdna/arbdmodel/{ => submodule/arbdmodel}/resources/two_bead_model/b1p2b2.dat (100%)
rename mrdna/arbdmodel/{ => submodule/arbdmodel}/resources/two_bead_model/b1p2p3.dat (100%)
rename mrdna/arbdmodel/{ => submodule/arbdmodel}/resources/two_bead_model/b1p2p3b3.dat (100%)
rename mrdna/arbdmodel/{ => submodule/arbdmodel}/resources/two_bead_model/diffusion/b-bead.hydropro-pri.bea (100%)
rename mrdna/arbdmodel/{ => submodule/arbdmodel}/resources/two_bead_model/diffusion/b-bead.hydropro-pri.vrml (100%)
rename mrdna/arbdmodel/{ => submodule/arbdmodel}/resources/two_bead_model/diffusion/b-bead.hydropro-res.txt (100%)
rename mrdna/arbdmodel/{ => submodule/arbdmodel}/resources/two_bead_model/diffusion/b-bead.hydropro-sol.txt (100%)
rename mrdna/arbdmodel/{ => submodule/arbdmodel}/resources/two_bead_model/diffusion/b-bead.pdb (100%)
rename mrdna/arbdmodel/{ => submodule/arbdmodel}/resources/two_bead_model/diffusion/b.hydropro.dat (100%)
rename mrdna/arbdmodel/{ => submodule/arbdmodel}/resources/two_bead_model/diffusion/hydropro-fit.txt (100%)
rename mrdna/arbdmodel/{ => submodule/arbdmodel}/resources/two_bead_model/diffusion/hydropro-sum.txt (100%)
rename mrdna/arbdmodel/{ => submodule/arbdmodel}/resources/two_bead_model/diffusion/hydropro.dat (100%)
rename mrdna/arbdmodel/{ => submodule/arbdmodel}/resources/two_bead_model/diffusion/hydropro10-lnx.exe (100%)
rename mrdna/arbdmodel/{ => submodule/arbdmodel}/resources/two_bead_model/diffusion/p-bead.hydropro-pri.bea (100%)
rename mrdna/arbdmodel/{ => submodule/arbdmodel}/resources/two_bead_model/diffusion/p-bead.hydropro-pri.vrml (100%)
rename mrdna/arbdmodel/{ => submodule/arbdmodel}/resources/two_bead_model/diffusion/p-bead.hydropro-res.txt (100%)
rename mrdna/arbdmodel/{ => submodule/arbdmodel}/resources/two_bead_model/diffusion/p-bead.hydropro-sol.txt (100%)
rename mrdna/arbdmodel/{ => submodule/arbdmodel}/resources/two_bead_model/diffusion/p-bead.pdb (100%)
rename mrdna/arbdmodel/{ => submodule/arbdmodel}/resources/two_bead_model/diffusion/p.hydropro.dat (100%)
rename mrdna/arbdmodel/{ => submodule/arbdmodel}/resources/two_bead_model/diffusion/run.sh (100%)
rename mrdna/arbdmodel/{ => submodule/arbdmodel}/resources/two_bead_model/p0p1p2p3.dat (100%)
rename mrdna/arbdmodel/{ => submodule/arbdmodel}/resources/two_bead_model/p1p2b2.dat (100%)
rename mrdna/arbdmodel/{ => submodule/arbdmodel}/resources/two_bead_model/p1p2p3.dat (100%)
rename mrdna/arbdmodel/{ => submodule/arbdmodel}/resources/two_bead_model/zeroBBP.dat (100%)
rename mrdna/arbdmodel/{ => submodule/arbdmodel}/resources/two_bead_model/zeroBPB.dat (100%)
rename mrdna/arbdmodel/{ => submodule/arbdmodel}/resources/two_bead_model/zeroBPP.dat (100%)
rename mrdna/arbdmodel/{ => submodule/arbdmodel}/resources/two_bead_model/zeroNBBB.dat (100%)
rename mrdna/arbdmodel/{ => submodule/arbdmodel}/resources/two_bead_model/zeroNBPB.dat (100%)
rename mrdna/arbdmodel/{ => submodule/arbdmodel}/resources/two_bead_model/zeroNBPP.dat (100%)
rename mrdna/arbdmodel/{ => submodule/arbdmodel}/segmentmodel.py (100%)
rename mrdna/arbdmodel/{ => submodule/arbdmodel}/ssdna_two_bead.py (100%)
rename mrdna/arbdmodel/{ => submodule/arbdmodel}/version.py (100%)
diff --git a/mrdna/arbdmodel/LICENSE b/mrdna/arbdmodel/submodule/arbdmodel/LICENSE
similarity index 100%
rename from mrdna/arbdmodel/LICENSE
rename to mrdna/arbdmodel/submodule/arbdmodel/LICENSE
diff --git a/mrdna/arbdmodel/README.md b/mrdna/arbdmodel/submodule/arbdmodel/README.md
similarity index 100%
rename from mrdna/arbdmodel/README.md
rename to mrdna/arbdmodel/submodule/arbdmodel/README.md
diff --git a/mrdna/arbdmodel/__init__.py b/mrdna/arbdmodel/submodule/arbdmodel/__init__.py
similarity index 100%
rename from mrdna/arbdmodel/__init__.py
rename to mrdna/arbdmodel/submodule/arbdmodel/__init__.py
diff --git a/mrdna/arbdmodel/abstract_polymer.py b/mrdna/arbdmodel/submodule/arbdmodel/abstract_polymer.py
similarity index 100%
rename from mrdna/arbdmodel/abstract_polymer.py
rename to mrdna/arbdmodel/submodule/arbdmodel/abstract_polymer.py
diff --git a/mrdna/arbdmodel/coords.py b/mrdna/arbdmodel/submodule/arbdmodel/coords.py
similarity index 100%
rename from mrdna/arbdmodel/coords.py
rename to mrdna/arbdmodel/submodule/arbdmodel/coords.py
diff --git a/mrdna/arbdmodel/fjc_polymer_model.py b/mrdna/arbdmodel/submodule/arbdmodel/fjc_polymer_model.py
similarity index 100%
rename from mrdna/arbdmodel/fjc_polymer_model.py
rename to mrdna/arbdmodel/submodule/arbdmodel/fjc_polymer_model.py
diff --git a/mrdna/arbdmodel/hps_polymer_model.py b/mrdna/arbdmodel/submodule/arbdmodel/hps_polymer_model.py
similarity index 100%
rename from mrdna/arbdmodel/hps_polymer_model.py
rename to mrdna/arbdmodel/submodule/arbdmodel/hps_polymer_model.py
diff --git a/mrdna/arbdmodel/interactions.py b/mrdna/arbdmodel/submodule/arbdmodel/interactions.py
similarity index 100%
rename from mrdna/arbdmodel/interactions.py
rename to mrdna/arbdmodel/submodule/arbdmodel/interactions.py
diff --git a/mrdna/arbdmodel/kh_polymer_model.py b/mrdna/arbdmodel/submodule/arbdmodel/kh_polymer_model.py
similarity index 100%
rename from mrdna/arbdmodel/kh_polymer_model.py
rename to mrdna/arbdmodel/submodule/arbdmodel/kh_polymer_model.py
diff --git a/mrdna/arbdmodel/kh_polymer_model_pair_epsilon.py b/mrdna/arbdmodel/submodule/arbdmodel/kh_polymer_model_pair_epsilon.py
similarity index 100%
rename from mrdna/arbdmodel/kh_polymer_model_pair_epsilon.py
rename to mrdna/arbdmodel/submodule/arbdmodel/kh_polymer_model_pair_epsilon.py
diff --git a/mrdna/arbdmodel/nonbonded.py b/mrdna/arbdmodel/submodule/arbdmodel/nonbonded.py
similarity index 100%
rename from mrdna/arbdmodel/nonbonded.py
rename to mrdna/arbdmodel/submodule/arbdmodel/nonbonded.py
diff --git a/mrdna/arbdmodel/onck_polymer_model.py b/mrdna/arbdmodel/submodule/arbdmodel/onck_polymer_model.py
similarity index 100%
rename from mrdna/arbdmodel/onck_polymer_model.py
rename to mrdna/arbdmodel/submodule/arbdmodel/onck_polymer_model.py
diff --git a/mrdna/arbdmodel/resources/charmm36.nbfix/par_all36_na.prm b/mrdna/arbdmodel/submodule/arbdmodel/resources/charmm36.nbfix/par_all36_na.prm
similarity index 100%
rename from mrdna/arbdmodel/resources/charmm36.nbfix/par_all36_na.prm
rename to mrdna/arbdmodel/submodule/arbdmodel/resources/charmm36.nbfix/par_all36_na.prm
diff --git a/mrdna/arbdmodel/resources/charmm36.nbfix/par_water_ions_na.prm b/mrdna/arbdmodel/submodule/arbdmodel/resources/charmm36.nbfix/par_water_ions_na.prm
similarity index 100%
rename from mrdna/arbdmodel/resources/charmm36.nbfix/par_water_ions_na.prm
rename to mrdna/arbdmodel/submodule/arbdmodel/resources/charmm36.nbfix/par_water_ions_na.prm
diff --git a/mrdna/arbdmodel/resources/charmm36.nbfix/top_all36_na.rtf b/mrdna/arbdmodel/submodule/arbdmodel/resources/charmm36.nbfix/top_all36_na.rtf
similarity index 100%
rename from mrdna/arbdmodel/resources/charmm36.nbfix/top_all36_na.rtf
rename to mrdna/arbdmodel/submodule/arbdmodel/resources/charmm36.nbfix/top_all36_na.rtf
diff --git a/mrdna/arbdmodel/resources/two_bead_model/BBP.dat b/mrdna/arbdmodel/submodule/arbdmodel/resources/two_bead_model/BBP.dat
similarity index 100%
rename from mrdna/arbdmodel/resources/two_bead_model/BBP.dat
rename to mrdna/arbdmodel/submodule/arbdmodel/resources/two_bead_model/BBP.dat
diff --git a/mrdna/arbdmodel/resources/two_bead_model/BPB.dat b/mrdna/arbdmodel/submodule/arbdmodel/resources/two_bead_model/BPB.dat
similarity index 100%
rename from mrdna/arbdmodel/resources/two_bead_model/BPB.dat
rename to mrdna/arbdmodel/submodule/arbdmodel/resources/two_bead_model/BPB.dat
diff --git a/mrdna/arbdmodel/resources/two_bead_model/BPP.dat b/mrdna/arbdmodel/submodule/arbdmodel/resources/two_bead_model/BPP.dat
similarity index 100%
rename from mrdna/arbdmodel/resources/two_bead_model/BPP.dat
rename to mrdna/arbdmodel/submodule/arbdmodel/resources/two_bead_model/BPP.dat
diff --git a/mrdna/arbdmodel/resources/two_bead_model/NBBB.dat b/mrdna/arbdmodel/submodule/arbdmodel/resources/two_bead_model/NBBB.dat
similarity index 100%
rename from mrdna/arbdmodel/resources/two_bead_model/NBBB.dat
rename to mrdna/arbdmodel/submodule/arbdmodel/resources/two_bead_model/NBBB.dat
diff --git a/mrdna/arbdmodel/resources/two_bead_model/NBPB.dat b/mrdna/arbdmodel/submodule/arbdmodel/resources/two_bead_model/NBPB.dat
similarity index 100%
rename from mrdna/arbdmodel/resources/two_bead_model/NBPB.dat
rename to mrdna/arbdmodel/submodule/arbdmodel/resources/two_bead_model/NBPB.dat
diff --git a/mrdna/arbdmodel/resources/two_bead_model/NBPP.dat b/mrdna/arbdmodel/submodule/arbdmodel/resources/two_bead_model/NBPP.dat
similarity index 100%
rename from mrdna/arbdmodel/resources/two_bead_model/NBPP.dat
rename to mrdna/arbdmodel/submodule/arbdmodel/resources/two_bead_model/NBPP.dat
diff --git a/mrdna/arbdmodel/resources/two_bead_model/b1p1p2b2.dat b/mrdna/arbdmodel/submodule/arbdmodel/resources/two_bead_model/b1p1p2b2.dat
similarity index 100%
rename from mrdna/arbdmodel/resources/two_bead_model/b1p1p2b2.dat
rename to mrdna/arbdmodel/submodule/arbdmodel/resources/two_bead_model/b1p1p2b2.dat
diff --git a/mrdna/arbdmodel/resources/two_bead_model/b1p2b2.dat b/mrdna/arbdmodel/submodule/arbdmodel/resources/two_bead_model/b1p2b2.dat
similarity index 100%
rename from mrdna/arbdmodel/resources/two_bead_model/b1p2b2.dat
rename to mrdna/arbdmodel/submodule/arbdmodel/resources/two_bead_model/b1p2b2.dat
diff --git a/mrdna/arbdmodel/resources/two_bead_model/b1p2p3.dat b/mrdna/arbdmodel/submodule/arbdmodel/resources/two_bead_model/b1p2p3.dat
similarity index 100%
rename from mrdna/arbdmodel/resources/two_bead_model/b1p2p3.dat
rename to mrdna/arbdmodel/submodule/arbdmodel/resources/two_bead_model/b1p2p3.dat
diff --git a/mrdna/arbdmodel/resources/two_bead_model/b1p2p3b3.dat b/mrdna/arbdmodel/submodule/arbdmodel/resources/two_bead_model/b1p2p3b3.dat
similarity index 100%
rename from mrdna/arbdmodel/resources/two_bead_model/b1p2p3b3.dat
rename to mrdna/arbdmodel/submodule/arbdmodel/resources/two_bead_model/b1p2p3b3.dat
diff --git a/mrdna/arbdmodel/resources/two_bead_model/diffusion/b-bead.hydropro-pri.bea b/mrdna/arbdmodel/submodule/arbdmodel/resources/two_bead_model/diffusion/b-bead.hydropro-pri.bea
similarity index 100%
rename from mrdna/arbdmodel/resources/two_bead_model/diffusion/b-bead.hydropro-pri.bea
rename to mrdna/arbdmodel/submodule/arbdmodel/resources/two_bead_model/diffusion/b-bead.hydropro-pri.bea
diff --git a/mrdna/arbdmodel/resources/two_bead_model/diffusion/b-bead.hydropro-pri.vrml b/mrdna/arbdmodel/submodule/arbdmodel/resources/two_bead_model/diffusion/b-bead.hydropro-pri.vrml
similarity index 100%
rename from mrdna/arbdmodel/resources/two_bead_model/diffusion/b-bead.hydropro-pri.vrml
rename to mrdna/arbdmodel/submodule/arbdmodel/resources/two_bead_model/diffusion/b-bead.hydropro-pri.vrml
diff --git a/mrdna/arbdmodel/resources/two_bead_model/diffusion/b-bead.hydropro-res.txt b/mrdna/arbdmodel/submodule/arbdmodel/resources/two_bead_model/diffusion/b-bead.hydropro-res.txt
similarity index 100%
rename from mrdna/arbdmodel/resources/two_bead_model/diffusion/b-bead.hydropro-res.txt
rename to mrdna/arbdmodel/submodule/arbdmodel/resources/two_bead_model/diffusion/b-bead.hydropro-res.txt
diff --git a/mrdna/arbdmodel/resources/two_bead_model/diffusion/b-bead.hydropro-sol.txt b/mrdna/arbdmodel/submodule/arbdmodel/resources/two_bead_model/diffusion/b-bead.hydropro-sol.txt
similarity index 100%
rename from mrdna/arbdmodel/resources/two_bead_model/diffusion/b-bead.hydropro-sol.txt
rename to mrdna/arbdmodel/submodule/arbdmodel/resources/two_bead_model/diffusion/b-bead.hydropro-sol.txt
diff --git a/mrdna/arbdmodel/resources/two_bead_model/diffusion/b-bead.pdb b/mrdna/arbdmodel/submodule/arbdmodel/resources/two_bead_model/diffusion/b-bead.pdb
similarity index 100%
rename from mrdna/arbdmodel/resources/two_bead_model/diffusion/b-bead.pdb
rename to mrdna/arbdmodel/submodule/arbdmodel/resources/two_bead_model/diffusion/b-bead.pdb
diff --git a/mrdna/arbdmodel/resources/two_bead_model/diffusion/b.hydropro.dat b/mrdna/arbdmodel/submodule/arbdmodel/resources/two_bead_model/diffusion/b.hydropro.dat
similarity index 100%
rename from mrdna/arbdmodel/resources/two_bead_model/diffusion/b.hydropro.dat
rename to mrdna/arbdmodel/submodule/arbdmodel/resources/two_bead_model/diffusion/b.hydropro.dat
diff --git a/mrdna/arbdmodel/resources/two_bead_model/diffusion/hydropro-fit.txt b/mrdna/arbdmodel/submodule/arbdmodel/resources/two_bead_model/diffusion/hydropro-fit.txt
similarity index 100%
rename from mrdna/arbdmodel/resources/two_bead_model/diffusion/hydropro-fit.txt
rename to mrdna/arbdmodel/submodule/arbdmodel/resources/two_bead_model/diffusion/hydropro-fit.txt
diff --git a/mrdna/arbdmodel/resources/two_bead_model/diffusion/hydropro-sum.txt b/mrdna/arbdmodel/submodule/arbdmodel/resources/two_bead_model/diffusion/hydropro-sum.txt
similarity index 100%
rename from mrdna/arbdmodel/resources/two_bead_model/diffusion/hydropro-sum.txt
rename to mrdna/arbdmodel/submodule/arbdmodel/resources/two_bead_model/diffusion/hydropro-sum.txt
diff --git a/mrdna/arbdmodel/resources/two_bead_model/diffusion/hydropro.dat b/mrdna/arbdmodel/submodule/arbdmodel/resources/two_bead_model/diffusion/hydropro.dat
similarity index 100%
rename from mrdna/arbdmodel/resources/two_bead_model/diffusion/hydropro.dat
rename to mrdna/arbdmodel/submodule/arbdmodel/resources/two_bead_model/diffusion/hydropro.dat
diff --git a/mrdna/arbdmodel/resources/two_bead_model/diffusion/hydropro10-lnx.exe b/mrdna/arbdmodel/submodule/arbdmodel/resources/two_bead_model/diffusion/hydropro10-lnx.exe
similarity index 100%
rename from mrdna/arbdmodel/resources/two_bead_model/diffusion/hydropro10-lnx.exe
rename to mrdna/arbdmodel/submodule/arbdmodel/resources/two_bead_model/diffusion/hydropro10-lnx.exe
diff --git a/mrdna/arbdmodel/resources/two_bead_model/diffusion/p-bead.hydropro-pri.bea b/mrdna/arbdmodel/submodule/arbdmodel/resources/two_bead_model/diffusion/p-bead.hydropro-pri.bea
similarity index 100%
rename from mrdna/arbdmodel/resources/two_bead_model/diffusion/p-bead.hydropro-pri.bea
rename to mrdna/arbdmodel/submodule/arbdmodel/resources/two_bead_model/diffusion/p-bead.hydropro-pri.bea
diff --git a/mrdna/arbdmodel/resources/two_bead_model/diffusion/p-bead.hydropro-pri.vrml b/mrdna/arbdmodel/submodule/arbdmodel/resources/two_bead_model/diffusion/p-bead.hydropro-pri.vrml
similarity index 100%
rename from mrdna/arbdmodel/resources/two_bead_model/diffusion/p-bead.hydropro-pri.vrml
rename to mrdna/arbdmodel/submodule/arbdmodel/resources/two_bead_model/diffusion/p-bead.hydropro-pri.vrml
diff --git a/mrdna/arbdmodel/resources/two_bead_model/diffusion/p-bead.hydropro-res.txt b/mrdna/arbdmodel/submodule/arbdmodel/resources/two_bead_model/diffusion/p-bead.hydropro-res.txt
similarity index 100%
rename from mrdna/arbdmodel/resources/two_bead_model/diffusion/p-bead.hydropro-res.txt
rename to mrdna/arbdmodel/submodule/arbdmodel/resources/two_bead_model/diffusion/p-bead.hydropro-res.txt
diff --git a/mrdna/arbdmodel/resources/two_bead_model/diffusion/p-bead.hydropro-sol.txt b/mrdna/arbdmodel/submodule/arbdmodel/resources/two_bead_model/diffusion/p-bead.hydropro-sol.txt
similarity index 100%
rename from mrdna/arbdmodel/resources/two_bead_model/diffusion/p-bead.hydropro-sol.txt
rename to mrdna/arbdmodel/submodule/arbdmodel/resources/two_bead_model/diffusion/p-bead.hydropro-sol.txt
diff --git a/mrdna/arbdmodel/resources/two_bead_model/diffusion/p-bead.pdb b/mrdna/arbdmodel/submodule/arbdmodel/resources/two_bead_model/diffusion/p-bead.pdb
similarity index 100%
rename from mrdna/arbdmodel/resources/two_bead_model/diffusion/p-bead.pdb
rename to mrdna/arbdmodel/submodule/arbdmodel/resources/two_bead_model/diffusion/p-bead.pdb
diff --git a/mrdna/arbdmodel/resources/two_bead_model/diffusion/p.hydropro.dat b/mrdna/arbdmodel/submodule/arbdmodel/resources/two_bead_model/diffusion/p.hydropro.dat
similarity index 100%
rename from mrdna/arbdmodel/resources/two_bead_model/diffusion/p.hydropro.dat
rename to mrdna/arbdmodel/submodule/arbdmodel/resources/two_bead_model/diffusion/p.hydropro.dat
diff --git a/mrdna/arbdmodel/resources/two_bead_model/diffusion/run.sh b/mrdna/arbdmodel/submodule/arbdmodel/resources/two_bead_model/diffusion/run.sh
similarity index 100%
rename from mrdna/arbdmodel/resources/two_bead_model/diffusion/run.sh
rename to mrdna/arbdmodel/submodule/arbdmodel/resources/two_bead_model/diffusion/run.sh
diff --git a/mrdna/arbdmodel/resources/two_bead_model/p0p1p2p3.dat b/mrdna/arbdmodel/submodule/arbdmodel/resources/two_bead_model/p0p1p2p3.dat
similarity index 100%
rename from mrdna/arbdmodel/resources/two_bead_model/p0p1p2p3.dat
rename to mrdna/arbdmodel/submodule/arbdmodel/resources/two_bead_model/p0p1p2p3.dat
diff --git a/mrdna/arbdmodel/resources/two_bead_model/p1p2b2.dat b/mrdna/arbdmodel/submodule/arbdmodel/resources/two_bead_model/p1p2b2.dat
similarity index 100%
rename from mrdna/arbdmodel/resources/two_bead_model/p1p2b2.dat
rename to mrdna/arbdmodel/submodule/arbdmodel/resources/two_bead_model/p1p2b2.dat
diff --git a/mrdna/arbdmodel/resources/two_bead_model/p1p2p3.dat b/mrdna/arbdmodel/submodule/arbdmodel/resources/two_bead_model/p1p2p3.dat
similarity index 100%
rename from mrdna/arbdmodel/resources/two_bead_model/p1p2p3.dat
rename to mrdna/arbdmodel/submodule/arbdmodel/resources/two_bead_model/p1p2p3.dat
diff --git a/mrdna/arbdmodel/resources/two_bead_model/zeroBBP.dat b/mrdna/arbdmodel/submodule/arbdmodel/resources/two_bead_model/zeroBBP.dat
similarity index 100%
rename from mrdna/arbdmodel/resources/two_bead_model/zeroBBP.dat
rename to mrdna/arbdmodel/submodule/arbdmodel/resources/two_bead_model/zeroBBP.dat
diff --git a/mrdna/arbdmodel/resources/two_bead_model/zeroBPB.dat b/mrdna/arbdmodel/submodule/arbdmodel/resources/two_bead_model/zeroBPB.dat
similarity index 100%
rename from mrdna/arbdmodel/resources/two_bead_model/zeroBPB.dat
rename to mrdna/arbdmodel/submodule/arbdmodel/resources/two_bead_model/zeroBPB.dat
diff --git a/mrdna/arbdmodel/resources/two_bead_model/zeroBPP.dat b/mrdna/arbdmodel/submodule/arbdmodel/resources/two_bead_model/zeroBPP.dat
similarity index 100%
rename from mrdna/arbdmodel/resources/two_bead_model/zeroBPP.dat
rename to mrdna/arbdmodel/submodule/arbdmodel/resources/two_bead_model/zeroBPP.dat
diff --git a/mrdna/arbdmodel/resources/two_bead_model/zeroNBBB.dat b/mrdna/arbdmodel/submodule/arbdmodel/resources/two_bead_model/zeroNBBB.dat
similarity index 100%
rename from mrdna/arbdmodel/resources/two_bead_model/zeroNBBB.dat
rename to mrdna/arbdmodel/submodule/arbdmodel/resources/two_bead_model/zeroNBBB.dat
diff --git a/mrdna/arbdmodel/resources/two_bead_model/zeroNBPB.dat b/mrdna/arbdmodel/submodule/arbdmodel/resources/two_bead_model/zeroNBPB.dat
similarity index 100%
rename from mrdna/arbdmodel/resources/two_bead_model/zeroNBPB.dat
rename to mrdna/arbdmodel/submodule/arbdmodel/resources/two_bead_model/zeroNBPB.dat
diff --git a/mrdna/arbdmodel/resources/two_bead_model/zeroNBPP.dat b/mrdna/arbdmodel/submodule/arbdmodel/resources/two_bead_model/zeroNBPP.dat
similarity index 100%
rename from mrdna/arbdmodel/resources/two_bead_model/zeroNBPP.dat
rename to mrdna/arbdmodel/submodule/arbdmodel/resources/two_bead_model/zeroNBPP.dat
diff --git a/mrdna/arbdmodel/segmentmodel.py b/mrdna/arbdmodel/submodule/arbdmodel/segmentmodel.py
similarity index 100%
rename from mrdna/arbdmodel/segmentmodel.py
rename to mrdna/arbdmodel/submodule/arbdmodel/segmentmodel.py
diff --git a/mrdna/arbdmodel/ssdna_two_bead.py b/mrdna/arbdmodel/submodule/arbdmodel/ssdna_two_bead.py
similarity index 100%
rename from mrdna/arbdmodel/ssdna_two_bead.py
rename to mrdna/arbdmodel/submodule/arbdmodel/ssdna_two_bead.py
diff --git a/mrdna/arbdmodel/version.py b/mrdna/arbdmodel/submodule/arbdmodel/version.py
similarity index 100%
rename from mrdna/arbdmodel/version.py
rename to mrdna/arbdmodel/submodule/arbdmodel/version.py
--
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