From 5e2b9f05db7988976f35a920e0d3b104dbb329ae Mon Sep 17 00:00:00 2001
From: Chris Maffeo <cmaffeo2@illinois.edu>
Date: Tue, 25 Feb 2020 17:21:49 -0600
Subject: [PATCH] Minor bug fix: Segment.rotate() provides numpy array of
quaternions instead of list
---
mrdna/readers/segmentmodel_from_pdb.py | 2 +-
mrdna/segmentmodel.py | 2 +-
2 files changed, 2 insertions(+), 2 deletions(-)
diff --git a/mrdna/readers/segmentmodel_from_pdb.py b/mrdna/readers/segmentmodel_from_pdb.py
index ca17030..8dec750 100644
--- a/mrdna/readers/segmentmodel_from_pdb.py
+++ b/mrdna/readers/segmentmodel_from_pdb.py
@@ -327,7 +327,7 @@ def SegmentModelFromPdb(*args,**kwargs):
stacks,
three_prime,
seq,
- orientations
+ np.array(orientations)
)
if __name__ == "__main__":
diff --git a/mrdna/segmentmodel.py b/mrdna/segmentmodel.py
index 33db573..10a5fe9 100644
--- a/mrdna/segmentmodel.py
+++ b/mrdna/segmentmodel.py
@@ -573,7 +573,7 @@ class Segment(ConnectableElement, Group):
orientations = np.array([self.contour_to_orientation(v) for v in u])
for i in ids:
orientations[i,:] = rotation_matrix.dot(orientations[i])
- quats = [quaternion_from_matrix(o) for o in orientations]
+ quats = np.array([quaternion_from_matrix(o) for o in orientations])
self.set_orientation_splines(u, quats)
def _set_splines_from_ends(self, resolution=4):
--
GitLab