diff --git a/segmentmodel.py b/segmentmodel.py index 8f3dd57b8b592e5dc16ab2b9351665fc955c6912..9018fc4e0830a42cc22d84c930252b9d3007cef8 100644 --- a/segmentmodel.py +++ b/segmentmodel.py @@ -1656,14 +1656,14 @@ class SegmentModel(ArbdModel): conversion = 0.014393265 # units "pN/AA" kcal_mol/AA^2 if b1.type_.name[0] == "D" and b2.type_.name[0] == "D": - elastic_modulus = 1000 # pN http://markolab.bmbcb.northwestern.edu/marko/Cocco.CRP.02.pdf + elastic_modulus_times_area = 1000 # pN http://markolab.bmbcb.northwestern.edu/marko/Cocco.CRP.02.pdf d = 3.4*sep - k = conversion*elastic_modulus/d + k = conversion*elastic_modulus_times_area/d else: ## TODO: get better numbers our ssDNA model - elastic_modulus = 800 # pN http://markolab.bmbcb.northwestern.edu/marko/Cocco.CRP.02.pdf + elastic_modulus_times_area = 800 # pN http://markolab.bmbcb.northwestern.edu/marko/Cocco.CRP.02.pdf d = 5*sep - k = conversion*elastic_modulus/d + k = conversion*elastic_modulus_times_area/d # print(sep,d,k) if b1 not in dists: