From 5b0294b3bec474809fa570b5469a337fb24dcffc Mon Sep 17 00:00:00 2001
From: Chris Maffeo <cmaffeo2@illinois.edu>
Date: Fri, 14 Sep 2018 15:21:33 -0500
Subject: [PATCH] Removed some unneccesary warnings
---
mrdna/segmentmodel.py | 15 ++++++++-------
1 file changed, 8 insertions(+), 7 deletions(-)
diff --git a/mrdna/segmentmodel.py b/mrdna/segmentmodel.py
index 4093096..3c7c05c 100644
--- a/mrdna/segmentmodel.py
+++ b/mrdna/segmentmodel.py
@@ -1010,17 +1010,17 @@ class SingleStrandedSegment(Segment):
seg2 = other.container
end1 = self.end3
end2 = other
- # assert( other.type_ == "end5" )
- if (other.type_ is not "end5"):
- print("WARNING: code does not prevent connecting 3prime to 3prime, etc")
+ assert(other.type_ != "end3")
+ # if (other.type_ is not "end5"):
+ # print("WARNING: code does not prevent connecting 3prime to 3prime, etc")
else:
seg1 = other.container
seg2 = self
end1 = other
end2 = self.start
- # assert( other.type_ == "end3" )
- if (other.type_ is not "end3"):
- print("WARNING: code does not prevent connecting 3prime to 3prime, etc")
+ assert(other.type_ != "end5")
+ # if (other.type_ is not "end3"):
+ # print("WARNING: code does not prevent connecting 3prime to 3prime, etc")
## Remove other connections involving these points
if end1.connection is not None:
@@ -1840,7 +1840,8 @@ class SegmentModel(ArbdModel):
for b1,b2 in intra_beads:
# assert( not np.isclose( np.linalg.norm(b1.collapsedPosition() - b2.collapsedPosition()), 0 ) )
if np.linalg.norm(b1.collapsedPosition() - b2.collapsedPosition()) < 1:
- print("WARNING: some beads are very close")
+ # print("WARNING: some beads are very close")
+ ...
parent = self._getParent(b1,b2)
--
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