diff --git a/mrdna/readers/segmentmodel_from_oxdna_pinyi.py b/mrdna/readers/segmentmodel_from_oxdna_pinyi.py index 9dcbbd1837515459defebbc91400031fef87d097..2f030240dcc75cd7480de157bbaa24a7fe095722 100644 --- a/mrdna/readers/segmentmodel_from_oxdna_pinyi.py +++ b/mrdna/readers/segmentmodel_from_oxdna_pinyi.py @@ -127,7 +127,7 @@ def mrdna_model_from_oxdna(coordinate_file, topology_file,virt2nuc=None,get_nt_p non_stack_ind,=np.where(nt_prop["stack"]==-1) for i in non_stack_ind: - zid=int(nt_prop.loc[i][zid])+int(nt_prop.loc[i]["fwd"])*2-1 + zid=int(nt_prop.loc[i]["zid"])+int(nt_prop.loc[i]["fwd"])*2-1 try: nt_prop["stack"][i]=bp_map[(nt_prop.loc[i]["vh"],str(zid),nt_prop.loc[i]["fwd"])] except: diff --git a/mrdna/readers/segmentmodel_from_scadnano.py b/mrdna/readers/segmentmodel_from_scadnano.py index 863a61b45a226e3ff9f5a3c8e3f3e8445c8ca66c..f47b9d3bbcb683e75448d9f335aad792404680b6 100644 --- a/mrdna/readers/segmentmodel_from_scadnano.py +++ b/mrdna/readers/segmentmodel_from_scadnano.py @@ -122,7 +122,7 @@ def gen_prop_table(fname): nt_prop["bp"]=bp non_stack_ind,=np.where(nt_prop["stack"]==-1) for i in non_stack_ind: - zid=int(nt_prop.loc[i][zid])+int(nt_prop.loc[i]["fwd"])*2-1 + zid=int(nt_prop.loc[i]["zid"])+int(nt_prop.loc[i]["fwd"])*2-1 try: nt_prop["stack"][i]=bp_map[(nt_prop.loc[i]["vh"],str(zid),nt_prop.loc[i]["fwd"])] except: