diff --git a/arbdmodel/__init__.py b/arbdmodel/__init__.py index bf34913c0792c64dd8cb8a972d811bc6dee371b5..de77ac90de7a6100295343e61705547e89546b05 100644 --- a/arbdmodel/__init__.py +++ b/arbdmodel/__init__.py @@ -408,6 +408,9 @@ class PointParticle(Transformable, Child): def get_restraints(self): return [(self,r) for r in self.restraints] + def duplicate(self): + new = deepcopy(self) + return new def __getattr__(self, name): """ diff --git a/arbdmodel/ssdna_two_bead.py b/arbdmodel/ssdna_two_bead.py index b077e914e9b6fbe34f083e968ae40374567f2c76..40fb40e5537ac389048f6b81e72468b7b5987ffd 100644 --- a/arbdmodel/ssdna_two_bead.py +++ b/arbdmodel/ssdna_two_bead.py @@ -76,7 +76,7 @@ class DnaStrandFromPolymer(Group): self.add_exclusion( i=b1, j=p3 ) ## Four consecutive nts - for i in range(len(nts)-4): + for i in range(len(nts)-3): p1,b1 = nts[i].children p2,b2 = nts[i+1].children p3,b3 = nts[i+2].children