Partially implemented analysis manager in EventAction and RunAction. Provided a way for configuration info to be shared with RunAction from other classes

New physics list to allow for optical simulation. New materials class to describe optical properties. Update RPD geometry to better reflect reality. New test RPD to visualize photon propogation. New 'pan flute' RPD prototype

MonteCarlo folder now available. Same as from Mike Phipps repository, except for few adaptions for Geant4 compatibility with newer versions and CMakeLists.txt changes to have the folder as part of JCaPA